did you run recon-all from a directory that you don't have permission to
write to?
On Mon, 15 Aug 2011, Ahmed, F, Me <fah...@sun.ac.za> wrote:
I don?t understand why I would all of a sudden be getting permission denied
errors, when I ran a complete study prior to this with absolutely no
problems at all.
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Rouhollah
Abdollahi
Sent: 15 August 2011 18:15
To: Ahmed, F, Me
Cc: freesurfer@nmr.mgh.harvard.edu; Louis Nicholas Vinke
Subject: Re: [Freesurfer] recon-all error with nu_correct
check this!!!
/bin/mv: cannot move `./tmp.mri_nu_correct.mni.26621/1/nu2_residue.mnc' to
`./
tmp.mri_nu_correct.mni.26621/1/nu2_est.mnc': Permission denied
On Mon, Aug 15, 2011 at 6:03 PM, Ahmed, F, Me <fah...@sun.ac.za>
<fah...@sun.ac.za> wrote:
Hi Louis,
The command line I am using at the beginning was the following:
recon-all-iNN_117_10/NN117_10.MR.RESEARCH_STELLENBOSCH.2.1.2010.02.09.13.10.21.390625.
46080549.IMA -s NN_117_10 -force -autorecon-all
-----Original Message-----
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Louis Nicholas
Vinke
Sent: 15 August 2011 17:59
To: Ahmed, F, Me <fah...@sun.ac.za>
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] recon-all error with nu_correct
Hi Fatima,
What is the recon-all command line you are using to start the recon?
-Louis
On Mon, 15 Aug 2011, Ahmed, F, Me <fah...@sun.ac.za> wrote:
> Hello Freesurfer experts,
>
> I am having great difficulty in trying to run the recon-all process on
some scans of mine. I have tried running it a number of times, to no avail
and the error I have gotten most recently is the nu_correct error. I have
attached the log for this recon-all and hope someone may be able to help.
>
> Also, I was told that there is a way one can upload a particular scan via
FTP, is this correct and if so, how does one go about doing this?
>
> Thank you!
> Fatima
>
>
>
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--
With Best Regards
Rouhollah Abdollahi
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