I looked at the nifti files in freeview. The orientation in freeview is
correct, but it appears all of the T1s that resulted in an error are washed out
in freeview. I can vaguely see the outline of the head, but there's a gray box
covering the image. When I click on regions of bone or brain in t
It could be that SPM is setting some scaling factor in the nifti header
that FS is not reading properly. Which version of FS are you using?
doug
On 12/17/2013 02:38 PM, JARED NIELSEN wrote:
> I looked at the nifti files in freeview. The orientation in freeview is
> correct, but it appears all
Hi Bruce,
Thanks for your response. It's a bit of a pain to access the dicoms, but it's
possible. The bigger problem now is that I can't get freeview to work. I type
in freeview into the command line and receive the following error:
freeview.bin: error while loading shared libraries: libvtkverd
Hi Jared
for the ones that run quickly and end, it's because you haven't told it
to do anything. The first couple of lines of the recon-all.log file give
the command line as:
Thu Dec 5 14:00:18 MST 2013
/mnt/NAS3/freesurfer/freesurfer//bin/recon-all
-i Time3_28908_s11038064-0005-1-01-0
