Re: [galaxy-dev] stdout in history

2014-05-31 Thread Wolfgang Maier
Hi Neil, I've only used this with my own tools, but basically it looks like: command whatever_your_tool_has_now /dev/null /command where /dev/null discards the output. Best, Wolfgang On 31.05.2014 01:11, neil.burd...@csiro.au wrote: Yes that would work. Can you supply an example if

Re: [galaxy-dev] stdout in history

2014-05-31 Thread Jorrit Boekel
Hi Neil, I had some problems with this before too, so I created an tool config option a long time ago in my own galaxy fork. Never really bothered with submitting it, but it lives in these commits: https://bitbucket.org/glormph/adapt/commits/4ba256a9b8782642429ecb5472a456584bed86d5

Re: [galaxy-dev] tool dependencies fail

2014-05-31 Thread Jorrit Boekel
Hi Isabelle, Not sure about specifying the absolute path for the tool dependency dir, but I always use it. Also, my env.sh neither has a #!/bin/bash shebang line, nor quote marks around the tool path. If you are in the hhsuite/default/ dir and source env.sh, can you then run hhblits yourself