*controllers/admin.py, in the jobs method of the Admin class. Hopefully
> that will provide the base structure for what you want to accomplish.
>
>--Dave B.
>
>
> On 3/27/13 12:02:20.000, Richard Park wrote:
>
>> Hey guys,
>> I know there's no current way
Hey guys,
I know there's no current way of canceling jobs or workflows through the
API, but does anyone have any idea on how to implement this in Galaxy? i.e.
where in the code base to see how galaxy is currently killing jobs.
My ideal solution would be to get the list of qeued jobs for a giving
h
utput, all other non-output steps
> should have HideDatasetActions added to the step automatically.
>
> -Dannon
>
>
>
> On Tue, Mar 5, 2013 at 5:32 PM, Richard Park wrote:
>
>> Hi everyone,
>> Does anybody know how Galaxy currently determines which outputs from a
>> tool a
Hi everyone,
Does anybody know how Galaxy currently determines which outputs from a tool
are shown when a workflow is run? I'm currently dynamically creating
workflows based on the number of given inputs and iterating through all
"HideDatasetAction*" for each tools "post_job_actions" to figure out
Hi everyone,
Does anybody know how Galaxy currently determines which outputs from a tool
are shown when a workflow is run? I'm currently dynamically creating
workflows based on the number of given inputs and iterating through all
"HideDatasetAction*" for each tools "post_job_actions" to figure out
> On Jan 30, 2013, at 2:54 PM, Richard Park wrote:
>
> > Hi Guys,
> > I've just updated to the latest galaxy-central and notice a problem when
> trying to export workflows via the api. In
> galaxy-central/lib/webapps/galaxy/api/workflows.py, I just need to a
Hi Guys,
I've just updated to the latest galaxy-central and notice a problem when
trying to export workflows via the api. In
galaxy-central/lib/webapps/galaxy/api/workflows.py, I just need to add in
an extra tab in lines 88 and 89, the patch is below.
PATCH using hg diff
diff -r 43fa4cb7
Hi Everyone,
Is there a way to directly copy files from galaxy with the proper file
name? I'm currently using the galaxy API to download files via HTTP, but it
is very slow and would like to speed up the process of copying files
directly, but am having a hard time getting the proper file names.
Ar
Hi Guys,
I updated to the latest galaxy distribution today and I cant seem to edit
existing workflows. I've seen others with this error from a Sept 07
distribution (
http://dev.list.galaxyproject.org/Can-t-edit-Galaxy-Workflow-ElementInterface-instance-has-no-attribute-render-td4656393.html),
but J
llers/dataset.py',
line 288 in display
return data.datatype.display_data(trans, data, preview, filename, to_ext,
chunk, **kwd)
TypeError: display_data() got an unexpected keyword argument 'key'
thanks,
Richard Park
___
Please ke
running into?
>
> As an aside, I'd love to look at the runtime parameter specification changes
> you've made for potential inclusion. This is a feature I've wanted to add
> for some time.
>
> Thanks!
>
> Dannon
>
> On Apr 4, 2012, at 4:17 PM, Ric
ng on
your needs, it might be feasible to have a few static workflows that you
reuse often via the workflow API. If that isn't the case, and you think
it'd be likely that you'll want to, say, programmatically modify parameters
at runtime based on input data heuristics, then the API does ne
comparison.
>
> Let me know if you need any help with this at all. Once it's done, if you're
> willing, we'd certainly like to merge the changes back in and include the
> functionality in the base galaxy distribution.
>
> -Dannon
>
>
>
>
> On Dec 5
d the API to allow for runtime parameter configuration? If
this is the case, any pointers on how to extend this would be greatly
appreciated.
Thank you,
Richard Park
___
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