Re: [galaxy-dev] Amazon cloud setup for galaxy training

Hello Anne, Overall, what we typically recommend is to launch a new instance and configure it as desired (eg, with tools, histories, and datasets of interest for the workshop). Then share that instance (using the CloudMan share-a-cluster feature -> sm

[galaxy-dev] Amazon cloud setup for galaxy training

Dear, I am setting up with my colleague Jing an Introductory Galaxy training course at the University of Cambridge due to on the 24th September. I am looking for help on how to setup the cloud to have a smooth user experience during the workshop. Would you have any links with information to r

[galaxy-dev] Amazon EC2 Cloudman: Running parallel Tophats and Master node has 260% load, worker idle and at 46%

Hi guys, I'm fairly new to cloud computing and about 2 days in to using cloudman for galaxy... I have setup a m2.4xlarge master node and flexible load for up to 4 workers of the m2.xlarge type, minimum one. I was able to upload 6 samples of paired end RNAseq->12 files, gz file sizes around 5-8 gb.

Re: [galaxy-dev] Amazon

For this instance, you'll need to restart using the old method for launching via the console, specifying the zone 1b. Detection of the zone volumes are in for existing clusters and specifying those for launch is on the short list of things coming up for cloud launch. On Oct 31, 2012, at 10:50

Re: [galaxy-dev] Amazon

Tried it again and same error message. The volume was originally created in us-east-1b and newly created instances are being started in us-east-1a. Shouldn't the availability zone be set to us-east-1b when the instance is requested or that info stored in the properties file in the S3 bucket? An

[galaxy-dev] Amazon

Started up a cluster on Amazon using the Launch a Galaxy Cloud Instance and got the following message. Since I don't have any control over where the instances are run not sure how I can control this. The last 4 or 5 times I have started up an existing instance has worked with no problem. Messag

Re: [galaxy-dev] Amazon cloud formation for galaxy

Yeah, also that is is pretty much how CloudMan handles the infrastructure management now - it has it's own descriptor (i.e., template) and from there it handles all the provisioning and coordination of the underlying resources. Granted, having Amazon do it would add to the robustness of the overall

[galaxy-dev] Amazon cloud formation for galaxy

Today's release of amazon cloud formation has to make the Galaxy Cloud stuff a bit easier: http://aws.typepad.com/aws/2011/02/cloudformation-create-your-aws-stack-from-a-recipe.html In theory with a description file like this: https://s3.amazonaws.com/cloudformation-templates/CloudFormationSampl