Hi all;
Is there a way for community members to contribute indexes to the rsync
server? This resource is awesome and I'm working on migrating the
CloudBioLinux retrieval scripts to use this instead of the custom S3
buckets we'd set up previously:
https://github.com/chapmanb/cloudbiolinux/blob/mas
Hi Jennifer,
Today I was trying to pull some bowtie2 indices from Galaxy rsync server for
PhiX to run some tests and just got the ones for bowtie1… I'm wondering what's
the state in regards to this past thread and what we can do to help in here.
Cheers!
Roman
7 mar 2013 kl. 20:01 skrev Jennife
Hi,
to chime into this discussion.
I found some inconsistency during my rsync endeavor and I'm curious if
there is any way to contribute to that service.
--
xenTro3 xenTro3 Frog (Xenopus tropicalis):
xenTro3 /galaxy/data/xenTro3/seq/xenTro3.fa
but only
/xenTro3.fa.gz exists.
---
ce6 /data/0/
Thanks,
There have been no public data updates since the migration started (late
last spring we froze the data). But there are some known issues and data
that is ready to be released, in the process of becoming ready, etc. We
expect to be able to start working on this again in the very near te
Hi Jen,
fantastic news!
Thanks a lot!
Bjoern
> Thanks,
>
> There have been no public data updates since the migration started
> (late last spring we froze the data). But there are some known issues
> and data that is ready to be released, in the process of becoming
> ready, etc. We expect to be
Hi Brad,
I really like this idea. I'm not going to open a ticket yet but talk
with Dan/team about some options. We have an alternate directory
structure modeled from last fall I'd like to get in place before we
start something like this ( is not yet implemented, but it or something
similar wo
Jen;
That sounds great, thanks for your enthusiasm and help organizing this.
I'm @bradchapman on Trello so feel free to add me to the ticket and let
me know how I can help. I'm happy to set this up however you feel best:
looking forward to having a shared repository for all this formatted
genome d
Hello Brad, Jennifer,
I'm also interested in this initiative since I'm using Brad's code as
a part of a testsuite for a bloom filter:
https://github.com/SciLifeLab/facs/blob/master/facs/utils/galaxy.py
As both of you pointed out, there's a need for some cleanup, there are
some stray files here a
Hi Brad (and Roman),
The team has talked about this in detail. There are a few wrinkles with
just pulling in indexes - Dan is doing some work that could change this
later on, but for now, the rsync will continue to point to the same
location as Main's genome data source. This means that there
