Hello,
do_dssp (4.5.5) is broken. There are two possible answers you're gonna get
here:
1) Use old dssp, which you are using.
2) You're an idiot, which are not.
What I did to solve the problem was, download gmx from git, and substitute
the /src/tools/do_dssp.c of gmx 4.5.5 with the one from the
Hi,
The explanation is that DSSP changed its syntax some time ago and do_dssp no
longer complied. More recent versions of do_dssp follows the new syntax while
still supporting the old one.
Erik
12 nov 2012 kl. 10.55 skrev João Henriques:
Hello,
do_dssp (4.5.5) is broken. There are two
Hi all,
I am meeting the following error in Gromacs 4.5.5 with do_dssp
Here is the command
do_dssp -f md.xtc -s md.tpr -o dssp.xpm
give me the following error
segmentation fault
I have downloaded the executable DSSP form http://swift.cmbi.ru.nl/gv/dssp/
and set the
Hello Friends
I have installed GROMACS 4.5.5 on linux.
I put the DSSP Executable in /usr/local/bin
when i run the following command:
do_dssp -s md.tpr -f md.trr -b 40 -e 50 -o fws_ss.xpm
i got the following error.
Reading file md.tpr, VERSION 4.5.5 (single precision)
Reading file md.tpr, VERSION
On 5/16/12 5:57 AM, bunty xy wrote:
Hello Friends
I have installed GROMACS 4.5.5 on linux.
I put the DSSP Executable in /usr/local/bin
when i run the following command:
do_dssp -s md.tpr -f md.trr -b 40 -e 50 -o fws_ss.xpm
i got the following error.
Reading file md.tpr, VERSION 4.5.5 (single
Dear all,
Iam trying to generate secondary structure plot through do_dssp program,
but there was an error like segmentation fault
Reading file md.tpr, VERSION 4.0.7 (single precision)
Reading file md.tpr, VERSION 4.0.7 (single precision)
Segmentation fault (core dumped)
bash-4.1#
can anybody
On 3/03/2012 5:14 PM, arun kumar wrote:
Dear all,
Iam trying to generate secondary structure plot through do_dssp
program, but there was an error like segmentation fault
Reading file md.tpr, VERSION 4.0.7 (single precision)
Reading file md.tpr, VERSION 4.0.7 (single precision)
Segmentation
before the configure step.
Best,
Carsten
Bests
Da: Carsten Kutzner ckut...@gwdg.de
A: Alex Jemulin alexbioi...@yahoo.com; Discussion list for GROMACS users
gmx-users@gromacs.org
Inviato: Martedì 22 Novembre 2011 13:25
Oggetto: Re: [gmx-users] do_dssp segmentation fault
Dear
Dear all
I'm experiencing the following error in Gromacs 4.5 with do_dssp
Here is the command
do_dssp -f md.xtc -s md.tpr -o secondary-structure.xpm -sc
secondary-structure.xvg -dt 10
give me the following error
segmentation fault
How can I fix it?
Thank in ad--
gmx-users mailing list
On 22/11/2011 7:28 PM, Alex Jemulin wrote:
Dear all
I'm experiencing the following error in Gromacs 4.5 with do_dssp
Here is the command
do_dssp -f md.xtc -s md.tpr -o secondary-structure.xpm -sc
secondary-structure.xvg -dt 10
give me the following error
segmentation fault
How can I fix it?
Dear Alex,
On Nov 22, 2011, at 9:28 AM, Alex Jemulin wrote:
Dear all
I'm experiencing the following error in Gromacs 4.5 with do_dssp
Here is the command
do_dssp -f md.xtc -s md.tpr -o secondary-structure.xpm -sc
secondary-structure.xvg -dt 10
give me the following error
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