Re: [gmx-users] using xmp file

2008-05-02 Thread Mark Abraham
pragya chohan wrote: Hi i found out the residues which form H bond but am still not able to get life time if H bond. The option -lifetime gives t as x and p(t) as y axis. is this value for all the bonds. How can i see the lifetime of each bond? There's an option for this. You can learn about

RE: [gmx-users] using xmp file

2008-05-02 Thread Justin A. Lemkul
e: Sat, 3 May 2008 02:06:52 +0200> From: [EMAIL PROTECTED]> > To: gmx-users@gromacs.org> Subject: Re: [gmx-users] using xmp file> > Mark > Abraham wrote:> > pragya chohan wrote:> >> Dear users> >> > >> I wasted to > look at H bonding bet

RE: [gmx-users] using xmp file

2008-05-02 Thread pragya chohan
200> From: [EMAIL PROTECTED]> To: > gmx-users@gromacs.org> Subject: Re: [gmx-users] using xmp file> > Mark > Abraham wrote:> > pragya chohan wrote:> >> Dear users> >> > >> I wasted to > look at H bonding between between a particular residue

Re: [gmx-users] using xmp file

2008-05-02 Thread Florian Dommert
Mark Abraham wrote: > pragya chohan wrote: >> Dear users >> >> I wasted to look at H bonding between between a particular residue >> and rest of the system. So I did g_hbond. It created a number of >> files I want to make a table indicating atom of residue >> participating, atom or residue number

Re: [gmx-users] using xmp file

2008-05-02 Thread Mark Abraham
pragya chohan wrote: Dear users I wasted to look at H bonding between between a particular residue and rest of the system. So I did g_hbond. It created a number of files I want to make a table indicating atom of residue participating, atom or residue number of Donor atom, lifetime of those b

[gmx-users] using xmp file

2008-05-02 Thread pragya chohan
Dear users I wasted to look at H bonding between between a particular residue and rest of the system. So I did g_hbond. It created a number of files I want to make a table indicating atom of residue participating, atom or residue number of Donor atom, lifetime of those bonds to show their sig