Many thanks for the answers
@Timothy
I know that probtrackx2 support surfaces but I did not manage to make it
work without hectic results (fiber crossing the surfaces used as stop,
combinatorial counting of endpoints ... ), even if FSL seems the most able
to process multi-shell data.
@Donna
I alr
As far as I know, caret5's multi-fiducial mapping is volume->surface rahter
than surface->volume.
The caret_command method works, but you'll need to convert HCP surf.gii ->
caret5 coord/topo (caret_command -file-convert -sc …). And your label.gii or
func.gii will need to be converted, too (car
I believe we don't include those in the releases, because dense connectome
files are very large (~30GB each). You should be able to generate them by
running wb_command -cifti-correlate on a subject's rfMRI dtseries file.
Tim
On Tue, Jun 3, 2014 at 5:55 PM, Ommen, Jurgen wrote:
> Hello every
Workbench currently doesn't have a way to do that. caret5 has a way to do
this (caret_command -surface-to-volume, and there is another method called
multi-fiducial mapping, though I'm not sure how to invoke it), though you
may need to do some file conversion.
On a side note, FSL's probtrackx does
