Re: [HCP-Users] calculating surface areas

Hi, Tim and Matt Thank you very much for the help! Longchuan On Sunday, March 8, 2015 5:18 PM, "Glasser, Matthew" wrote: Right I forgot that I can’t just check the dev version… Peace, Matt. From: Timothy Coalson Date: Sunday, March 8, 2015 at 3:15 PM To: Matt Glasser Cc: Longchuan

Re: [HCP-Users] Fwd: Difficulties reading cifti into matlab with ft_read_cifti or ciftiopen

Hi Dr. Schoffelen, I have just submitted the bug. I also searched the script for ft_write_cifti and found nothing about .dlabel there. Does that mean that .dlabel is not supported for that command either? Best, Cherry On Sun, Mar 8, 2015 at 2:24 PM, jan-mathijs schoffelen < jm.schoffe...@gmail.c

Re: [HCP-Users] calculating surface areas

Right I forgot that I can’t just check the dev version… Peace, Matt. From: Timothy Coalson Date: Sunday, March 8, 2015 at 3:15 PM To: Matt Glasser Cc: Longchuan Li , Hcp-users Subject: Re: [HC

Re: [HCP-Users] calculating surface areas

It is not deprecated in the current release. In the next release -metric-vertex-sum will be deprecated by -metric-stats and -metric-weighted-stats. The -metric-vertex-sum command will still work for several releases, but the new commands are more flexible, and will be the recommended commands to

Re: [HCP-Users] calculating surface areas

Hi Tim, Could you explain how you want users to compute surface areas of ROIs now that the previous command that did that seems deprecated?  The example usage for doing this should probably be in the command’s usage as well, since this will be a common task.   Thanks, Matt. From: Longc

Re: [HCP-Users] Fwd: Difficulties reading cifti into matlab with ft_read_cifti or ciftiopen

Hi Cherry, Sorry about this. Could you go to the following URL and follow the instructions in order to create a ‘bug’ on FieldTrip’s bug tracking website: http://fieldtrip.fcdonders.nl/bugzilla ? It would be great if you could create this bug and also upload the dense label file that is giving

Re: [HCP-Users] Fwd: Difficulties reading cifti into matlab with ft_read_cifti or ciftiopen

Update: I can not open .dlabel.nii files with ft_read_cifti. Error message is: Dot name reference on non-scalar structure. Error in ft_read_cifti (line 930) key = NamedMap.LabelTable.Key; On Sun, Mar 8, 2015 at 12:49 PM, Yizhou Ma wrote: > Hi Dr. Schoffelen, > > Thanks for yo

Re: [HCP-Users] Fwd: Difficulties reading cifti into matlab with ft_read_cifti or ciftiopen

Hi Dr. Schoffelen, Thanks for your reply. I downloaded the fieldtrip package you listed and I can now open all kinds of cifti files. The initial package I installed is from this page: https://github.com/Washington-University/cifti-matlab and I was linked from here: https://wiki.humanconnectome.or

[HCP-Users] calculating surface areas

Hi, HCP experts Could someone tell me what is the best way to calculate the surface areas of the white and gray matter in Workbench? I have some data from unique populations whose the surface statistics are not summerized in the stat files. Thank you in advance! Longchuan ___

Re: [HCP-Users] Fwd: Difficulties reading cifti into matlab with ft_read_cifti or ciftiopen

Hi Cherry, Could you tell us where you got the copy from ft_read_cifti? It sounds as if the error you reported is due to me screwing up the code, and somehow this buggy function made it to a location where you obtained it from. As far as I am aware the most recent version that you can obtain fr

Re: [HCP-Users] Difficulties reading cifti into matlab with ft_read_cifti or ciftiopen

I'm a bit late on this, but the error messages in the original post are consistent with an incorrect header on the file being opened, please try a different cifti file and see if that works. Tim On Sun, Mar 8, 2015 at 4:01 AM, jan-mathijs schoffelen < jm.schoffe...@gmail.com> wrote: > > Hi Cher

Re: [HCP-Users] Difficulties reading cifti into matlab with ft_read_cifti or ciftiopen

Hi Cherry, Could you tell us where you got the copy from ft_read_cifti? It sounds as if the error you reported is due to me screwing up the code, and somehow this buggy function made it to a location where you obtained it from. As far as I am aware the most recent version that you can obtain f