Re: [HCP-Users] HCP Pipelines :DiffusionPreprocessing

2016-02-15 Thread Dev vasu
e that is helpful, > > Tim > > On Tue, Feb 9, 2016, at 05:25, Glasser, Matthew wrote: > > Read the part about environment script: > https://github.com/Washington-University/Pipelines/wiki/v3.4.0-Release-Notes,-Installation,-and-Usage > > > Peace, > > Matt.

Re: [HCP-Users] HCP Pipelines :DiffusionPreprocessing

2016-02-15 Thread Timothy B. Brown
me of an actual directory.  While >>> it won't prevent things from working if the directory happens to be >>> named HCPPIPEDIR, but it may add to some confusion and it certainly >>> won't make the parts of the scripts that depend upon the HCPPIPDIR >>> environment

Re: [HCP-Users] HCP Pipelines :DiffusionPreprocessing

2016-02-13 Thread Dev vasu
> On Tue, Feb 9, 2016, at 05:25, Glasser, Matthew wrote: >> >> Read the part about environment script: >> https://github.com/Washington-University/Pipelines/wiki/v3.4.0-Release-Notes,-Installation,-and-Usage >> >> >> Peace, >> >> Matt. >> >> F

Re: [HCP-Users] HCP Pipelines :DiffusionPreprocessing

2016-02-09 Thread Dev vasu
Glasser, Matthew wrote: > > Read the part about environment script: > https://github.com/Washington-University/Pipelines/wiki/v3.4.0-Release-Notes,-Installation,-and-Usage > > > Peace, > > Matt. > > From: Dev vasu > Date: Monday, February 8, 2016 at 9:10 PM > To: Ti

Re: [HCP-Users] HCP Pipelines :DiffusionPreprocessing

2016-02-09 Thread Timothy B. Brown
Glasser , "hcp-users@humanconnectome.org" > Subject: Re: [HCP-Users] HCP > Pipelines :DiffusionPreprocessing > > Dear Sir, > > If possible could you please provide me some additional documentation > on how to use efficiently use pre-processing pipelines, I ha

Re: [HCP-Users] HCP Pipelines :DiffusionPreprocessing

2016-02-09 Thread Glasser, Matthew
to:tsc...@mst.edu>> Cc: Matt Glasser mailto:glass...@wustl.edu>>, "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] HCP Pipelines :DiffusionPreprocessing Dear Sir, If possible cou

Re: [HCP-Users] HCP Pipelines :DiffusionPreprocessing

2016-02-08 Thread Dev vasu
oks like you don’t have the pipelines environment script properly >>> set up (empty/global/…). Have another look at the set up instructions. >>> >>> Peace, >>> >>> Matt. >>> >>> From: on behalf of Dev vasu < >>> vasudevamurthy.

Re: [HCP-Users] HCP Pipelines :DiffusionPreprocessing

2016-02-08 Thread Timothy Coalson
gt;> That looks like you don’t have the pipelines environment script properly >> set up (empty/global/…). Have another look at the set up instructions. >> >> Peace, >> >> Matt. >> >> From: on behalf of Dev vasu < >> vasudevamurthy.devulapa

Re: [HCP-Users] HCP Pipelines :DiffusionPreprocessing

2016-02-08 Thread Dev vasu
16 at 10:55 AM > To: "hcp-users@humanconnectome.org" > Subject: [HCP-Users] HCP Pipelines :DiffusionPreprocessing > > Dear Professor, > > I would like to use DiffusionPreprocessing Pipeline for my DTI structural > connectivity analysis, I have completed the tutorial on how to

Re: [HCP-Users] HCP Pipelines :DiffusionPreprocessing

2016-02-08 Thread Glasser, Matthew
.com>> Date: Monday, February 8, 2016 at 10:55 AM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] HCP Pipelines :DiffusionPreprocessing Dear Professor, I would like to use DiffusionPrepro

[HCP-Users] HCP Pipelines :DiffusionPreprocessing

2016-02-08 Thread Dev vasu
Dear Professor, I would like to use DiffusionPreprocessing Pipeline for my DTI structural connectivity analysis, I have completed the tutorial on how to use HCP Pipelines for Preprocessing, I have followed the instruction and i have provided the path to study folder and subject, when i run the Di