Many thanks for the answers
@Timothy
I know that probtrackx2 support surfaces but I did not manage to make it
work without hectic results (fiber crossing the surfaces used as stop,
combinatorial counting of endpoints ... ), even if FSL seems the most able
to process multi-shell data.
@Donna
I
basile.pins...@gmail.com
Date: Thursday, June 5, 2014 at 7:42 AM
To: Donna Dierker do...@brainvis.wustl.edu
Cc: hcp-users@humanconnectome.org hcp-users@humanconnectome.org
Subject: Re: [HCP-Users] gifti labels to volume
Many thanks for the answers
@Timothy
I know that probtrackx2 support
at explaining it?
From: basile pinsard basile.pins...@gmail.com
Date: Thursday, June 5, 2014 at 11:19 AM
To: Matt Glasser glass...@wusm.wustl.edu
Cc: Donna Dierker do...@brainvis.wustl.edu, hcp-users@humanconnectome.org hcp-users@humanconnectome.org
Subject: Re: [HCP-Users] gifti labels to volume
: Donna Dierker do...@brainvis.wustl.edumailto:do...@brainvis.wustl.edu,
hcp-users@humanconnectome.orgmailto:hcp-users@humanconnectome.org
hcp-users@humanconnectome.orgmailto:hcp-users@humanconnectome.org
Subject: Re: [HCP-Users] gifti labels to volume
ok, do you have applied dilation to the mask
at 11:42 AM
To: Matt Glasser glass...@wusm.wustl.edu
Cc: Donna Dierker do...@brainvis.wustl.edu,
hcp-users@humanconnectome.org hcp-users@humanconnectome.org
Subject: Re: [HCP-Users] gifti labels to volume
ok, do you have applied dilation to the mask before inverting it? can't
Workbench currently doesn't have a way to do that. caret5 has a way to do
this (caret_command -surface-to-volume, and there is another method called
multi-fiducial mapping, though I'm not sure how to invoke it), though you
may need to do some file conversion.
On a side note, FSL's probtrackx
As far as I know, caret5's multi-fiducial mapping is volume-surface rahter
than surface-volume.
The caret_command method works, but you'll need to convert HCP surf.gii -
caret5 coord/topo (caret_command -file-convert -sc …). And your label.gii or
func.gii will need to be converted, too
