[Histonet] Re: Cooling paraffin blocks with ice

2012-09-30 Thread Hobbs, Carl
Nice one, Joelle. Good points I thank you for that sophisticated paper! Yep, wax is not JUST wax. It indeed has a crystalline, sophisticated structure. Yes, cutting good sections depends upon temp/speed of cutting/angle of knife/additives/effectiveness of processing. May be more variables

[Histonet] Re: Cooling paraffin blocks with ice VS. Freezing Spray

2012-09-30 Thread Hobbs, Carl
I don't like ice-trays. Well, I tried them and.they swelled me blocks! Stick them blocks in the fridge, instead! Sure, cooling them blocks is damn fine to get very thin kidney sections... Diane! The wonderful Chief Tech of Gt Ormond St kids Hospital Where are you??? You know all this

[Histonet] Re: Cooling paraffin blocks with ice

2012-09-29 Thread Hobbs, Carl
Hmmm Nobody has yet mentioned the rationale behind the need to cool Pwax blocks. Sure, it makes sectioning easier butnot always. Never forget the huff! Let's get back down to microtomy basics, so newbies have an appreciation that sectioning is a mechanical process, as well as an

[Histonet] Re: Rat Brain Serial Sections

2012-09-26 Thread Hobbs, Carl
My bread and butter tissue preps are Pwax brainsoften serial sections but not for stereology ( eg: mouse/chick/rat/zfish/monkey). I routinely, like many others, cut serial sections varying between 10 to 200 sections ( more, if reqd) They can be prone to chatter. When this happens I

Re: [Histonet] Frozen section artefact

2012-09-25 Thread Hobbs, Carl
Assuming that you are fixing fresh-frozen tissue sections: Tissue is autolysing. Use Formalin for 10 mins or 1:1 acetone:alcohol for 10 mins. Imho, acetone is not a fixative..it's a delipidizer. 5 mins in that mixture is too short a time for the alcohol to be an effective coagulant fixer.

[Histonet] Re: DAPI stained smeared nuclei

2012-08-31 Thread Hobbs, Carl
When you use smear, do you mean that the nuclei are blurring/ill-defined , with threads of DAPI-positivity coming away from the nuclei? If so, it is due to underfixation. Acetone is not a proper fixative. In the time one uses is, it rapidly delipidises the tissue, rendering it better preserved,

[Histonet] Re: Markers for Rat Samples

2012-07-25 Thread Hobbs, Carl
You could have a look here, in the image gallery- top left link under Immunhistochemistry . Then scroll down to individual protein/ab hyperlinks. Maybe you will find some suitable Abs. NB: Sure you can use rat primaries on rat tissue, it just depends on whether you are looking for NK cells

[Histonet] RE: Buckling Artifact

2012-07-15 Thread Hobbs, Carl
Can you submit an image? I can imagine what this is but, no point until I see an image? What are you doing that is different, if this is a new problem? Curiously, Carl Carl Hobbs Histology Manager Wolfson CARD School of Biomedical Sciences Kings College London Guys Campus SE1 1UL Tel: 020

[Histonet] Re: Methanol in H2O2 explanation

2012-07-14 Thread Hobbs, Carl
I thought that I answered the original Q? Imho, 3% H2O2 in distilled water is as good as any other recipe, given time and concentration. Sure, use a lower conc IF you achieve negative rbcs. I use water because it is cheaper. A lower concentration will take longerwhy bother?? Kill that

[Histonet] RE: Methanol in H2O2 explanation

2012-07-14 Thread Hobbs, Carl
If you have tissue that has more peroxidase than usual, then extra time is required. Depends on the concentration of H2O2 used ;-) A massive excess of substrate ( 3%) is good. Carl ___ Histonet mailing list Histonet@lists.utsouthwestern.edu

[Histonet] Re: Methanol in H2O2 explanation

2012-07-12 Thread Hobbs, Carl
H202 mixed with Buffer here.(instead of aq.) That's OK too, right? Right. An addition to the misconceptions that Tim interestingly elucidates: some use H2O2 in buffer because they think that , as the enzyme is performing a physiologic catalytic reaction, it should be at a physiological pH, in

[Histonet] Re: Methanol in H2O2 explanation

2012-07-11 Thread Hobbs, Carl
I made a mistakeI DO rehydrate before staining, as Tony pointed out. I just don't use graded alcohols between the xylene and water ( x4 changes 74OP IMS). Carl Hobbs Histology Manager Wolfson Centre for Age-Related Diseases School of Biomedical Sciences King's College London Guys Campus

[Histonet] Re: Methanol in H2O2 explanation

2012-07-10 Thread Hobbs, Carl
Why do some people use methanolic H2O2? Why do people rehydrate after dewaxing? Both are unnecessary, under usual conditions. Methanol was used in the early days as a peroxidase blocker by itself. The combination was devised as a belt and bracer method. As you stated, you use aq H2O2 effectively.

[Histonet] Re: Immunofluorescence in the clinical laboratory,

2012-05-12 Thread Hobbs, Carl
Dear Gayle, I would be interested to know why you are interested to know ;-) Respectfully, Carl Carl Hobbs Histology and Imaging Manager Wolfson CARD School of Biomedical Sciences Kings College London Guys Campus SE1 1UL Tel: 020 78486813 Fax: 020 78486816 020 78486813

[Histonet] RE: B-cell Ab to work on rat tissue

2012-01-16 Thread Hobbs, Carl
Many thanks for the information, Ray. carl ___ Histonet mailing list Histonet@lists.utsouthwestern.edu http://lists.utsouthwestern.edu/mailman/listinfo/histonet

[Histonet] RE: B-cell Ab to work on rat tissue

2012-01-15 Thread Hobbs, Carl
It may be that CD79a Ab is appropriate? It works well on Pwax sections, after HIER. I do not know the specificity of this Ag for B cells, so would be interested in feedback Check here for images : http://www.immunoportal.com/modules.php?name=gallery2 Carl Hobbs Histology Manager Wolfson CARD

[Histonet] re: clearing of whole tissue

2011-11-18 Thread Hobbs, Carl
Well, I have used all of the usual suspects over many years but, this one has taken me by complete surprise! If anyone can explain the rationale of the reaction, I would be most interested. One for J Kiernan, I think? Ah, yes: Sca/e: a chemical approach for fluorescence imaging and

[Histonet] Re: Seeking Beta-Amyloid not needing FA pretreatment

2011-10-26 Thread Hobbs, Carl
Be careful: HIER may expose not only extracellular amyloid plaques but also intracellular APP ( or...is it intracellular A beta ;-)) Eg: with 6E10 it is directed against an epitope found in APP and also A beta: if you do Formic acid, only extracellular plaques are positive...after

[Histonet] Re: IHC on Pig help

2011-08-13 Thread Hobbs, Carl
Treat the tissue exactly as if it was human. Sure, your anti CD68 may not work on pig but, it's worth a try. LBH? Probably LDH. If so, better to measure serum levels? Trypen blue? Prob. Trypan blue. It's a dye used for cell viability tests. So, it seems that 2 and 3 are not IHC at all. More

[Histonet] re: IHC on frozen sections

2011-04-20 Thread Hobbs, Carl
1) NO 2) Yes...at 4C 3) Sure, if somebody is around to do thisor you want to make somebody go in and do it ;-) carl carl Carl Hobbs Histology Manager Wolfson Centre for Age-Related Diseases School of Biomedical Sciences King's College London Guys Campus London SE1 1UL Tel.020

[Histonet] RE:Acetylcholinesterase

2011-02-05 Thread Hobbs, Carl
Hey! The GREAT Brian Lake was THE Man behind it all, imho. Respect to Him. Filipe, jest like Hiederman/Heyderman?, became famous because of the people/technicians who did all of the work and...never got the credit ;-) Carl Hobbs Histology Manager Wolfson CARD Kings College London 020

[Histonet] Re: Refrigerate formalin?

2010-07-29 Thread Hobbs, Carl
Hey, Sara! Congratulations. Enjoy all them Hassles and Advantages in your NEW lab. Best wishes, Carl NB: re Formalin fixation...one could argue that one should store such-fixed specimens in 90% alcohol, after the appropriate Formalin fixation time? OR...30% Sucrose: now, THAT is a PRESERVATIVE

[Histonet] Re: NG2 antibody/ Antigen retrieval/Protocol

2010-07-16 Thread Hobbs, Carl
I am trying to stain human glioma sections(as a positive control) using Anti-NG2 antibody. The tissue that I have is Paraffin embedded and I appreciate if somebody could send me the protocol for antigen retrieval ,antibody titer and IHC protocol. Let us know what Ab you are currently using (

Re: [Histonet] Phospho-Histone 3 (SER10) antibody

2010-07-14 Thread Hobbs, Carl
I use Upstate's 06-570. Excellent for human, rat, mouse FFPW sections after HIER. I have no idea what amino acid is phosphorylated but, if you are wanting an Ab against cells in mitosis only, this is the best, imho. Carl Carl Hobbs Histology Manager Wolfson Centre for Age-Related Diseases

[Histonet] Re: Has anyone used a biotin block in their antibody diluent?

2010-07-07 Thread Hobbs, Carl
I assume that you are using a biotinylated detection system? If so, endogenous biotin labelling is specific, tho' NOT wanted ;-) So, before you try variations, just buy a kit and see if your non-specific immunostaining is due to endog. biotin ...follow their instructions by pre-incubating in

[Histonet] Re: IHC mouse antibody on mouse tissue

2010-04-15 Thread Hobbs, Carl
Imhojust do it on your tissue and include a no primary control. If the latter is clear, don't worry about MOM. If it is not, then we can advise further. You don't state what Ab/tissue/detection system you are using.. This would help a lot as protocols will vary according to the tissue

[Histonet] Re: ammonium chloride in ihc

2010-03-18 Thread Hobbs, Carl
Used for quenching Formalin - induced fluorescence. Carl Hobbs Histology Manager Wolfson Centre for Age-Related Diseases King's College London Tel.020 7848 6810 ___ Histonet mailing list Histonet@lists.utsouthwestern.edu

re:[Histonet] TGF beta on FFPE

2010-03-08 Thread Hobbs, Carl
What species, V? More info? Them TGF ligand /receptors are as difficult as FGF/FGFr, imho. respect, Carlos. ___ Histonet mailing list Histonet@lists.utsouthwestern.edu http://lists.utsouthwestern.edu/mailman/listinfo/histonet

[Histonet] Re: Does anyone use Rainbow Frost slides from IMEB

2010-02-12 Thread Hobbs, Carl
I may have missed your explanatory post so, my apologies. How do you know that your slides are dirty ? Thanks, carl ___ Histonet mailing list Histonet@lists.utsouthwestern.edu http://lists.utsouthwestern.edu/mailman/listinfo/histonet

[Histonet] Re: Mitochodrial IHC marker in FFPE skeletal muscle

2010-01-15 Thread Hobbs, Carl
I have not yet found an anti mitochondrial Ab that works in mouse FFPE tissues, so I am very interested. However, the protein that Chemicon's MAB1273 is directed against survivesit has worked very well for me in human FFPE sections after Citric acid HIER ( see here for images:

Re: [Histonet] Hello fellow Histo's , 2 questions for you

2009-12-24 Thread Hobbs, Carl
Rene's comments are most appropriate. Respect. When I was in Clinical Histopath ( a technician) at two different well-known London major Hospitals, it would be the technician who would be in the theatre when renal bxs were taken. EG; the person who took the biopsy would pass the specimen to

Re: [Histonet] Green Fluorescent Protein

2009-10-27 Thread Hobbs, Carl
GFP can be detected directly in FFPwax sections if the expression level is high enough. Yo can easliy check this, using one section before you immunoprobe. Sure, Ab detection will guarantee you a strong signal but, again, if the exression of the protein is high enough. I have come across

Re: [Histonet] black DAB instead of brown

2009-10-09 Thread Hobbs, Carl
Following on from Paula Pierce's apposite answer: what DAB solution are you using? A DAB kit that may well contain metal enhancers? carl ___ Histonet mailing list Histonet@lists.utsouthwestern.edu

[Histonet] Re: ImmPACT DAB kit

2009-09-16 Thread Hobbs, Carl
Many thanks for the replies regarding this reagent. I delayed purchasing this as I was very skeptical: however, I can achieve a 1/5-10 fold dilution factor for my precious low affinity (? thus low dilution factor) Abs. I will not be using ImmPACT chromogen kit routinely as, for the vast

[Histonet] ImmPACT DAB kit

2009-09-15 Thread Hobbs, Carl
Has anyone tested this? I would be very interested. Ta carl ___ Histonet mailing list Histonet@lists.utsouthwestern.edu http://lists.utsouthwestern.edu/mailman/listinfo/histonet

[Histonet] Re: mercury vs led lights **Commercial Response**

2009-09-12 Thread Hobbs, Carl
Thanks for adding a response. However, I am a old Techie who does not understand what you are saying. My apologies. I use Alexa 488, 594 and also Hoechst to stain nuclei ( red, green , blue) So, if I changed from MY Xcite system, to LEDs, can I be assured that those three flourochromes I use

[Histonet] Re: pERK IHC

2009-09-05 Thread Hobbs, Carl
Re other IP chick images...I think that they were from using Millipore's 06-182. I was concerned that blood vessels were also positive... so I just dropped it. Any ideas? carl ___ Histonet mailing list Histonet@lists.utsouthwestern.edu

[Histonet] Re: pERK IHC

2009-09-03 Thread Hobbs, Carl
Santa Cruz sc-101761. I tested it on FFPW sections of rat brain sections, after Citric acid HIER and it is very good ( if the results are specific, of course;-) It is stated as being Human/Mouse/rat reactive. I have two images posted here : http://www.immunoportal.com/index.php for this Ab.

[Histonet] Re:Endogenous biotin blocking

2009-09-01 Thread Hobbs, Carl
Your understanding is correct, imho. I add a no primary control on my stABCpx-DAB run whenever I am testing new tissues and assess any positivity that could be due to endogenous biotin. You will quickly build up a knowledge of those tissues that automatically require biotin - blocking. ( eg

RE: [Histonet] COX-2

2009-08-31 Thread Hobbs, Carl
Why a mouse Ab? I have two anti-Cox-2 rabbit polys that seem to co-localise. ___ Histonet mailing list Histonet@lists.utsouthwestern.edu http://lists.utsouthwestern.edu/mailman/listinfo/histonet

[Histonet] Re: anti-GFP antibody

2009-08-20 Thread Hobbs, Carl
I am sure someone has a cunning combination! I use Abcam's ab13970 chicken anti GFP in Pwax sections after HIER. For me, it is very good Image at Abcam or here : http://www.immunoportal.com/index.php Good luck! carl ___ Histonet mailing list

[Histonet] Re: reagents for IHC

2009-08-04 Thread Hobbs, Carl
Are you using automated IHC-staining machinery, Naira? ___ Histonet mailing list Histonet@lists.utsouthwestern.edu http://lists.utsouthwestern.edu/mailman/listinfo/histonet

[Histonet] Re: IHC free floating sections

2009-07-31 Thread Hobbs, Carl
Apologies if I have not adhered to Histonet protocol: I have changed my Browser from IE8 to latest Firefox and am not yet familiar! I agree with Rene: stay with the same wells and give additional, longer washes. Imho, even experienced users suffer section damage if they change wells.

[Histonet] Re: Tissue Washing

2009-07-31 Thread Hobbs, Carl
Again, apologies if I have messed up with message delivery : Firefox from IE is a learning curve after IE for many years. Re your problem: only part that I reckon that is your problem is ONLY using ~20mins in an oven. Leave for 2hrs at 60C, then stain.( overnight if you can is great for HEs)

[Histonet] Re: RE: human vimentin IHC

2009-07-15 Thread Hobbs, Carl
I agree with Jason: have a look in image gallery here http://www.immunoportal.com/ for an image of HES cells in mouse tissue, using V9 clone. No personal experience with Human specific SMA but plenty of images ( ASMA) in IP gallery Carl Hobbs Histology Manager Wolfson Centre for

RE: [Histonet] DAKO Liquid DAB

2009-07-11 Thread Hobbs, Carl
I use a homemade DAB solution: I aliquot and freeze. No problemo for 15 yrs, Patsy. If you do not agree , please check out this site http://www.immunoportal.com/index.php All of my DAB images are developed using -20C DAB aliquots. carlos ___ Histonet

[Histonet] Re:Beta-Amyloid

2009-06-29 Thread Hobbs, Carl
Richard.I agree but I worry that antibody 6E10 reacts to the abnormally processed isoforms, as well as precursor forms. ( my bold) Does this mean that this Ab also demonstrates APP? I must admit to confusion re this statement. I would appreciate your further opinion. respectfully,

[Histonet] re: Beta-amyloid

2009-06-25 Thread Hobbs, Carl
Have a look in the image gallery here : http://www.immunoportal.com/index.php I am interested to know why you want to avoid Formic acid AR. In my XP, Formic acid exclusively exposes plaque-beta amyloid, using appropriate Abs. However, whether or not I am right, Citric acid ( or whatever your

[Histonet] Re:C-kit

2009-06-13 Thread Hobbs, Carl
http://www.immunoportal.com/index.php carl ___ Histonet mailing list Histonet@lists.utsouthwestern.edu http://lists.utsouthwestern.edu/mailman/listinfo/histonet

[Histonet] Re: Embeeding frozen tissue in paraffin

2009-05-15 Thread Hobbs, Carl
Embedding frozen tissue in Pwax is very possible, Tomasz. If your tissue has been frozen NOT using OCT, just place the frozen tissue into acetone that has been cooled to -20C. x3 changes of -20C acetone , then immediately place tissue into molten pwax x3 changes. Agitate frequently, gently. I

[Histonet] re: Nuclear fast red

2009-02-27 Thread Hobbs, Carl
My sincere apologies...I uploaded the previous Histonet list because I forgot to enter the appropriate re: in subject of email. Contrite carl ___ Histonet mailing list Histonet@lists.utsouthwestern.edu

Re: [Histonet] Nuclear fast red

2009-02-26 Thread Hobbs, Carl
I agree with Geoff re NFRed staining solution. I have always had good results with home-made NFRed, if only for 2/4 months. Much cheaper too. Sure, try Neutral red: differentiate in water until you like the contrast then, blot dry your section and immerse in Xylene after a time that you think has

[Histonet] Re: PCNA

2008-12-11 Thread Hobbs, Carl
Use a PC10 mouse clone for pwax sections: works very well on many species that have been fixed in routine Formalin. Imho, no special procedures reqd. Sure, AR is best. If you wish to check out this site: http://www.immunoportal.com/index.php you might find further help? Also , be very careful if

[Histonet] Re: NG2

2008-12-05 Thread Hobbs, Carl
I use Chemicon's AB5320 anti NG2 ( 1/50-100) on mouse and rat pwax brain sections. I need AR and use Citric acid pH6 in a microwaveable pressure cooker.Standard stABCpxDAB detection. Apart from the poor dilution factor, it's a very good reagent, imo. Carl Hobbs Histology Manager Wolfson Centre

[Histonet] re: NGFrp75

2008-11-12 Thread Hobbs, Carl
Hi Erin. You don't state what the I.D. of the Chemicon Ab is, nor the species / tissue prep. you are using. I have compared Chemicon's AB1554 with Sigma's N3908 ( on rat and mouse Formalin-fixed P.wax sections). Also, Novocastra have an anti human NGFR ( gp75) : NCL-NGFR, which I have not

[Histonet] Re: 200Proof

2008-11-07 Thread Hobbs, Carl
Just to try to help to make clear to those of us who get confused when people talk about proof and % alcohol, I would recommend reading : http://en.wikipedia.org/wiki/Proof_spirit Proof is all about NOT getting a BANG from gunpowder ;-) In UK Histopath/Histology labs, we traditionally use 64OP

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