Re: [Jmol-developers] load models {0 0 1} is broken in 14.6.0 seires

Thank you. Does this message means something to you? It’s from 14.6.0. script ERROR: TypeError: this.setShapeVisibility is not a function. (In 'this.setShapeVisibility(a,b)', 'this.setShapeVisibility' is undefined) Maybe not all files from the new version loaded properly? On 22 Jun 2016, at 7:

Re: [Jmol-developers] is source code missing at SF ?

A temporary solution, maybe not the latest version: http://sourceforge.net/p/jmol/code/19835/tree/trunk/ Jaim On Jun 16, 2014, at 11:07 PM, Angel Herráez wrote: > There is nothing at > http://sourceforge.net/p/jmol/code/ > > I used to go there for seeing the code. What has changed? > > >

Re: [Jmol-developers] Jmol web site

We need to move the whole site on using the new JSmol version. I could help with that. Also, never worked on jmol.sourceforge.net Whoever does it needs editor rights. Jaim On Mar 27, 2014, at 4:57 PM, Robert Hanson mailto:hans...@stolaf.edu>> wrote: I have never wor

Re: [Jmol-developers] Test of Jmol applet signed with a trusted certificate

Can’t make work the signed applet on local files, Mac 10.9, Safari 7.0 nor Firefox 25.0 Success anyone? Jaim On Nov 6, 2013, at 9:56 PM, Nicolas Vervelle mailto:nverve...@gmail.com>> wrote: Hi, I've produced jars for Jmol signet applet that are signed with my own trusted certificate. The jar

Re: [Jmol-developers] bug in Java applet? JSmol 13.2.4 and 13.3.4

use HTML5, on Mac 10.8.5, both Safari 6.0.5 and Chrome 29.0.1547.65 fail when loading a local file. See here the last three lines in console: Jmol applet jmolApplet0_object__431989276316017__ ready call loadScript jsmol\core\corescript.z.js Jmol._readyCallback failed TypeError: 'null' is not an o

[Jmol-developers] Jmol PNGJ content

Is there a way to control what get's stored in the PNGJ file from Jmol? In particular: if the structure has a surface: can you create a PNGJ file containing also the pre-calculated isosurface data file (JVXL ?), in a way that when loaded into Jmol there will not be need for recomputing the surfa

Re: [Jmol-developers] Jmol/JSmol 13.2?

On Mar 25, 2013, at 12:42 PM, Rolf Huehne wrote: > For me the point here is not that the user knows what he is using but > that scripts can know it and adapt accordingly. > > Regards, > Rolf Of course. This is true in a perfect ideal world. In our experience, more than once you need to support

Re: [Jmol-developers] Jmol/JSmol 13.2?

Jaim On Mar 24, 2013, at 9:31 PM, Robert Hanson wrote: more than what we see here, attached? On Sat, Mar 23, 2013 at 11:29 PM, Jaime Prilusky mailto:jaime.prilu...@weizmann.ac.il>> wrote: It would be good to have complete information on System and JSmol itself, from JSmol menu, as Jmol

Re: [Jmol-developers] Jmol/JSmol 13.2?

It would be good to have complete information on System and JSmol itself, from JSmol menu, as Jmol displays. Today, the About line on JSmol reports signed Jmol and the System submenu lines have no value. Jaim On Mar 23, 2013, at 7:04 PM, Robert Hanson wrote: Are we ready to increment the versi

Re: [Jmol-developers] speed tests

http://chemapps.stolaf.edu/jmol/jsmol/j2s/test/test_replace.htm Mozilla/5.0 (Macintosh; Intel Mac OS X 10.7; rv:18.0) Gecko/20100101 Firefox/18.0 5.0 (Macintosh) x+=x: 18 x.join: 62 http://chemapps.stolaf.edu/jmol/jsmol/j2s/test/test_array.htm Mozilla/5.0 (Macintosh; Intel Mac OS X 10.7; rv:18.0

Re: [Jmol-developers] false users in Jmol Wiki are increasng

on hold requests. The installation is quite straightforward, but I'll be happy in answering questions should you have any. Best regards, Jaim -- Dr Jaime Prilusky Head Bioinformatics R&D Bioinformatics and Data Management Department of Biological Services Weizmann Institute of Scie

Re: [Jmol-developers] use of the OBJECT tag in IE9

I followed all your questions and everything looks ok, on both FFox 12.0 and Safari 5.1.7 on Mac 10.7.4 On Jun 4, 2012, at 8:50 PM, Robert Hanson wrote: Actually, that was just the control test. Here are the real tests. These use percentages for the applet size. http://chemapps.stolaf.edu/jmo

Re: [Jmol-developers] use of the OBJECT tag in IE9

Both pages are Ok on both FFox 12.0 and Safari 5.1.7 on Mac. (show/hide info, links following =caffeine?, etc) Drag-minimize on page simple2.html, however, on both FFox and Safari, once turned on, it can't be turned off. Jaim On Jun 4, 2012, at 8:36 PM, Robert Hanson wrote: Hurray! Thanks. Ja

Re: [Jmol-developers] use of the OBJECT tag in IE9

Bob, Safari 5.1.7 on Mac 10.7.4 shows the empty white square and stays there. No mouse movements nor clicks are enough to elicit any behavior. FireFox 12.0 and Chrome 19.0... on Mac load the applet immediately. Jaim On Jun 3, 2012, at 4:34 AM, Robert Hanson wrote: I use MSIE 9, and I haven't h

Re: [Jmol-developers] Wiki - recent proliferation of abusive newusers

etails if you want. Regards, Jaim -- Dr Jaime Prilusky | jaime.prilu...@weizmann.ac.il Head Bioinformatics| R&D Bioinformatics and Data Management | Department of Biological Services | Weizmann Institute of Science | fax: 972-8

[Jmol-developers] Slab transparency options

ready available in Jmol? Thanks in advance, Jaim -- Dr Jaime Prilusky | jaime.prilu...@weizmann.ac.il Head Bioinformatics| R&D Bioinformatics and Data Management | Department of Biological Services | Weizmann Institute of Science | f

Re: [Jmol-developers] pymol2jmol, a Proteopedia project

unknown to us, and in implementing changes in Jmol. Even when we started the project, it's clearly a Jmol project at the end. Regards, Jaim -- Dr Jaime Prilusky | jaime.prilu...@weizmann.ac.il Head Bioinformatics| R&D Bioinformatics and Data Manag

Re: [Jmol-developers] pymol2jmol, a Proteopedia project

created on PyMOL. There's of course, room for collaboration. Best regards, Jaim -- Dr Jaime Prilusky | jaime.prilu...@weizmann.ac.il Head Bioinformatics| R&D Bioinformatics and Data Management | Department of Biological Services | Weiz

Re: [Jmol-developers] pymol2jmol, a Proteopedia project

According to "Jonathan Gutow" : > two_sided_lighting --> fullylit > cartoon_fancy_sheets ---> turn on antialias for cartoons Thanks Jonathan for a prompt reply. Jaim -- Dr Jaime Prilusky | jaime.prilu...@weizmann.ac.il Head Bioinformatics

[Jmol-developers] pymol2jmol, a Proteopedia project

port PyMOL commands that either have no equivalent in Jmol or do have equivalent commands of which we were unaware. Looking forward to comments and suggestions, -- Dr Jaime Prilusky | jaime.prilu...@weizmann.ac.il Head Bioinformatics| R&D Bioinform

Re: [Jmol-developers] split screen?

tp://chemapps.stolaf.edu/jmol/docs/examples-11/sync2.htm ? Jaim -- Dr Jaime Prilusky | jaime.prilu...@weizmann.ac.il Head Bioinformatics| R&D Bioinformatics and Data Management | Department of Biological Services | Weizmann Institute of Science

[Jmol-developers] Re: Single PDB file altLoc/insertion report?

lumn 17. > If you do it, why not make it more general: also an option for non-blank in > column 27 (insertions). -- Dr Jaime Prilusky | [EMAIL PROTECTED] Head of Bioinformatics ISPC| R&D Bioinformatics and Data Management | Weizmann Institute of Sc

[Jmol-developers] Re: [Jmol-users] request for comment -- draw

According to Bob Hanson: > http://www.stolaf.edu/people/hansonr/jmol/test/json/pmesh.htm > draw Great! It looks good. Nice demo page. Have you considered allowing to add the 'arrow' tip to the line? Jaim -- Dr Jaime Prilusky | [EMAIL PROTECTED] Head o

Re: [Jmol-developers] draw line or vector

tter take a look to the under development page at http://bioportal.weizmann.ac.il/dipol-bin/dipol2j.cgi?pdb_id=2ace I would rather draw the Dipole and Mass moments vectors with arrows. Jaim -- Dr Jaime Prilusky | [EMAIL PROTECTED] Head of Bioinformatics ISPC| R&D B

[Jmol-developers] draw line or vector

uld do? Thanks in advance, Jaim -- Dr Jaime Prilusky | [EMAIL PROTECTED] Head of Bioinformatics ISPC| R&D Bioinformatics and Data Management | Weizmann Institute of Science | fax: 972-8-9344113 76100 Rehovot - Israel | tel: 972-8

Re: [Jmol-developers] model rotation and other wishes

the calculus can always start from the initial state when the file was loaded. Jaim -- Dr Jaime Prilusky | [EMAIL PROTECTED] R&D Bioinformatics and Data Management | Weizmann Institute of Science | fax: 972-8-9344113 76100 Rehovot - Israel | t

[Jmol-developers] model rotation and other wishes

Is there something like "blink 5" to have a residue to glow 5 times to call the user's attention? Jaim -- Dr Jaime Prilusky | [EMAIL PROTECTED] R&D Bioinformatics and Data Management | Weizmann Institute of Science | fax: 972-8-9344113 76100 Reho

[Jmol-developers] Re: suggestion for Jmol.js and a question

data. I'm loosing any user defined condition on the previous model, like orientation, zoom, etc., but this is enough for now. Jaim -- Dr Jaime Prilusky | [EMAIL PROTECTED] R&D Bioinformatics and Data Management | Weizmann Institute of Science | fax: 972

[Jmol-developers] Re: Jmol improvements in PDB element type recognition

dbRecNames (http://bip.weizmann.ac.il/oca-bin/pdbRecNames) Jaim -- Dr Jaime Prilusky | [EMAIL PROTECTED] R&D Bioinformatics and Data Management | Weizmann Institute of Science | fax: 972-8-9344113 76100 Rehovot - Israel | tel: 972-8-9344959 info URL http: