[Jmol-users] Jmol and interactive 3D pdf figures

2009-12-19 Thread Jan Halborg Jensen
Hi, I see that there is an option coming on creating interactive 3D pdf figures[1] with Jmol[2]. A question and a comment When will this option be available? In the post Robert Hanson compares this feature to POV-Ray, i.e. a specialized feature for the experts.  I would disagree with that. 

Re: [Jmol-users] Jmol and interactive 3D pdf figures

2009-12-19 Thread Rzepa, Henry
I would therefore advocate making this option as easy as possible to use within Jmol. In my view, interactive 3D pdf figures should really be the rule rather than the exception in scientific publishing, and Jmol could lead the way. Publishers are likely to love interactive PDF, since it is

Re: [Jmol-users] Jmol and interactive 3D pdf figures

2009-12-19 Thread Brian McMahon
A brief plug for a workshop I'm running under the aegis of ICSTI in Paris in February (http://www.icsti.org/programme_winter2010.php) to discuss just this issue. The IUCr has been using Jmol for a while to provide interactive figures in the HTML versions of our journal articles. We're also

Re: [Jmol-users] Jmol and interactive 3D pdf figures

2009-12-19 Thread Rzepa, Henry
It's not clear to me if many publishers yet have a coherent strategy regarding interactive figures. I have had around five publishers accept the concept of Jmol-enhanced interactive figures (the latest being Science). However, it has to be said that the first publisher to do so (about 4 years

Re: [Jmol-users] Jmol and interactive 3D pdf figures

2009-12-19 Thread Brian McMahon
I do not believe that the publishers regard Jmol as supported, but of course it has to be acknowledged that Jmol depends on underlying Java, and its difficult to see how that might have a future mapped in decades rather than years. I presume however that it would not be difficult to

Re: [Jmol-users] Need help passing a state script form one applet to another via javascript...Got it!...

2009-12-19 Thread Jonathan Gutow
Everybody thanks for the advice. I've got it working. I did have to use the vertical line syntax, which I believe was implemented for inline data because of CR/LF problems sometime in the past. In the process, I've also managed to store the state data in a hidden div rather than a