see http://chemapps.stolaf.edu/jmol/docs/examples-11/Jmol-11.zip
By the way, a quick way to reload the original coordinates is just to use
load XYZ ""
This doesn't reload the file, it just replaces the current coordinates with
those in the file. So the orientation and rendering don't change the
That's fixed. Will upload.
On Sun, May 23, 2010 at 11:14 PM, Robert Hanson wrote:
> Ah, yes. Not sending the signal to recalculate shapes after restore. For
> now, add this after the restore:
>
> select *;translateselected {0 0 0}
>
> That sends the signal that the atoms have moved positions and
Ah, yes. Not sending the signal to recalculate shapes after restore. For
now, add this after the restore:
select *;translateselected {0 0 0}
That sends the signal that the atoms have moved positions and that the
cartoon has to be recalculated.
On Sun, May 23, 2010 at 9:47 PM, Wayne Decatur wrot
My "Nah" is in reference to "void" having anything to do with it.
JME here is in reference to a named object. It's possible the browser has a
bug that gets confused when a named object and an id object have the same
label, but it really should be OK -- that's what we do with "JmolApplet0".
Suppose
I was using the compare command to visualize how the monomers of an asymmetric
homodimer are related.
So I loaded an edited version of 3lqq into the Jmol application (vers
12.0.RC12). (The file is at http://drop.io/tykyjxt/asset/3lqqab-pdb )
Then I ran the following commands by entering one at
Phil,
Yikes! Now you really have my attention.
void someFunction() is legit JavaScript syntax. It says, "execute the
function, but don't return anything." Usually, this is used to keep an
href, which acts (tries to load a url) on a return value from acting.
But it's legit, so it will work in o
On May 23, 2010, at 7:15 PM, Otis Rothenberger wrote:
> Hi Again Phil,
>
> Salmon Cakes.
Sounds good!!
Actually, I am on a Mac using Safari. And I call a function because I want to
do some other stuff in setting up the problem. The following is my preliminary
function script. The first
Hi Again Phil,
Salmon Cakes.
Anyway, It sounds like you may be using the following context:
href = "javascript: document.getElementById("JME").reset()
That may require a preceding void() (maybe "void" also works). This all
depends on what is returned by reset(). This aspect (uncertainty) of
r
nah.
On Sun, May 23, 2010 at 5:23 PM, Philip Bays wrote:
> hmmm.
>
>void JME.reset();
>
> seems to work.
>
>
> On May 23, 2010, at 6:08 PM, Otis Rothenberger wrote:
>
> > Phil,
> >
> > Reset works on my Windows/Firefox. Let me play with another idea that I
> > have, and I'll get back to
Jay,
What machine are you testing it on. There was a bug in the MacOS 10.6 JVM that
was causing problems with execution of script calls using the javascript
interface. It seems to have been fixed in the latest update. If you are using
a Mac and a webkit browser for testing make sure you are
hmmm.
void JME.reset();
seems to work.
On May 23, 2010, at 6:08 PM, Otis Rothenberger wrote:
> Phil,
>
> Reset works on my Windows/Firefox. Let me play with another idea that I
> have, and I'll get back to you. Wife calling me for dinner. I'll write
> back in about an hour.
>
>
Phil,
Reset works on my Windows/Firefox. Let me play with another idea that I
have, and I'll get back to you. Wife calling me for dinner. I'll write
back in about an hour.
Otis
On 5/23/2010 6:01 PM, Philip Bays wrote:
> Otis:
>
> That is what I thought too.But it does not do it for me. St
Otis:
That is what I thought too.But it does not do it for me. Stops the
processing at that point.
Phil
On May 23, 2010, at 5:26 PM, Otis Rothenberger wrote:
> Phil,
>
> document.getElementById("JME").reset()
>
> where JME is the ID of the applet.
>
>
> Otis
>
> On 5/23/2010 4:44 PM,
Phil,
document.getElementById("JME").reset()
where JME is the ID of the applet.
Otis
On 5/23/2010 4:44 PM, Philip Bays wrote:
> What is the javascript statement to clear the drawing in JME?
>
> document.getElementById("JME").???
>
> J. Philip Bays
> Professor of Chemistry
> Depar
From
http://www.molinspiration.com/jme/doc/jme_functions.html
public void JME.reset()
clears the drawing canvas (deletes all molecules)
--
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Jmol-users mailing list
Jmol-
What is the javascript statement to clear the drawing in JME?
document.getElementById("JME").???
J. Philip Bays
Professor of Chemistry
Department of Chemistry and Physics
Saint Mary's College
Notre Dame, IN 46556
(574) 284-4663
pb...@saintmarys.edu
Hello Jay
Difficult to test ribbons with a one-residue model. I will try to guess:
1. I imagine this is not the case, but you have a call to "Jmol.jss" (two S
letters)
2. The jmolRadioGroup should take an array of arrays. Maybe it works with what
you have,
but better make all elements array
Hi Guys :
I have an application that uses JMol, but the radio controls wont
trigger any events.
Im puzzled because :
1) I dont see any errors in the java script console.
2) The JMol Console is clearly registering the events associated with the
buttons...
But alas, there is no result in the
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