Re: [Jmol-users] Polyhedra

2010-05-24 Thread Romuald Poteau
Thank you very much, it does exactly what I need All the best, Romuald Poteau -- ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lis

Re: [Jmol-users] select atoms

2010-05-24 Thread Paul Pillot
You need to select back the whole model "select all" prior changing the view to wireframe. Le 24 mai 2010 à 18:56, Maurice Schroff a écrit : > Hello, > sorry for asking again but I don´t know how my problem could be solved. I > created a web page with animations, using html code. > I created a

Re: [Jmol-users] Polyhedra

2010-05-24 Thread Robert Hanson
no automatic way, but it would be a simple enough Jmol script. Var atoms = {*} Var n = atoms.length Var minDistance = 3.0 # perhaps for (Var i = 1; i <= n; i++) { Var a = atoms[i] for (Var j = i + 1; j <= n; j++) { Var b = atoms[j] if (b.distance(a) < minDistance) { for (Var k

Re: [Jmol-users] select atoms

2010-05-24 Thread Maurice Schroff
Hello, sorry for asking again but I don´t know how my problem could be solved. I created a web page with animations, using html code. I created a menu for different model types (wireframe, cpk..) and also checkboxes to highlight some atoms. Now this is what is happening. I ticked one checkbox on t

Re: [Jmol-users] JmolSmilesApplet

2010-05-24 Thread Robert Hanson
right. On Mon, May 24, 2010 at 10:45 AM, Philip Bays wrote: > Bob: > > This is really great. Thanks!! I now have a small page set up and am > looking toward a larger project using it. > > I would think that the applet would work with any drawing applet, as long > as you can get the smiles str

[Jmol-users] JmolSmilesApplet

2010-05-24 Thread Philip Bays
Bob: This is really great. Thanks!! I now have a small page set up and am looking toward a larger project using it. I would think that the applet would work with any drawing applet, as long as you can get the smiles string and the non-stereochemical smiles string out of the applet. Is tha

[Jmol-users] Polyhedra

2010-05-24 Thread Romuald Poteau
Dear jmol users, I am working on clusters, which exhibit polyhedra structures not always easy to represent with balls and sticks. David Wales, at the origin of several papers on the topic of nanclusters, has adopted the representation that can be seen for example at : http://physchem.ox.ac.uk/~

Re: [Jmol-users] select atoms

2010-05-24 Thread Angel Herráez
Unbelievable, but true. Where you define the menu, you have

Re: [Jmol-users] select atoms

2010-05-24 Thread Maurice Schroff
Hello, oh okay quite simple. I tried to create a drop down menu as you described in you book using teh html code: var x = new Array() x[0]=["spacefill off; wireframe on", "wireframe"] x[1]=["spacefill 30%; wirefra

Re: [Jmol-users] select atoms

2010-05-24 Thread Angel Herráez
You cannot use that syntax select atomNo=4,8,11,17,14,6 You must use select atomNo=4,atomNo=8,atomNo=11,atomNo=17,atomNo=14,atomNo=6 -- ___ Jmol-users mailing list Jmo

Re: [Jmol-users] select atoms

2010-05-24 Thread Maurice Schroff
Hello, I have got another problem this time. I wanted to select all equatorial atoms of cyclohexane and all equatorial via checkboxes. I tried it with this source code: jmolCheckbox("select elemNo=1; color lime;", "select *; color cpk;", "Highlight an equatorial H atom"); jmolCheckbox("sel

Re: [Jmol-users] Clear JME

2010-05-24 Thread Philip Bays
Yes. Otis and I figured that out last night. It has been two years since I wrote code and my old brain is slow recalling the details. Thanks all. I did discover what my multiple browsers respond to:-( Phil On May 24, 2010, at 12:02 AM, Robert Hanson wrote: > Phil, you SURE you have assigned

Re: [Jmol-users] embed jmol in powerpoint

2010-05-24 Thread Angel Herráez
Maurice, as far as I know Liveweb will just display inside Powerpoint whatever webpage you have. >From your description, I'm not sure exactly what your problem is, but I don't think Jmol has anything to do with it. On the other hand, I find that using Liveweb is not worth the bother. I'd sugge

[Jmol-users] embed jmol in powerpoint

2010-05-24 Thread Maurice Schroff
Hello, As i tried to embed Jmol in a website and then using the LiveWeb Add-In for powerpoint to show this website I noticed that the background of the page which is the energy diagram of cyclohexane in its different konformations was not displayed. So sees anybody a chance to embed real Jmol in

Re: [Jmol-users] Clear JME

2010-05-24 Thread Angel Herráez
Two cents from this side of the Atlantic: function newProblem(){ document.getElementById("JME").reset(); } reset that reset that All work in Firefox/Win and Safari/Win Curiously, Firefox is clever (or stupid?) enough to also accept JME.reset() despite I am not using a "name"