Re: [Jmol-users] R: Re: two JSmols in the page

2012-11-26 Thread Robert Hanson
indeed. I fixed the strange Firefox bug but broke this. On Sun, Nov 25, 2012 at 2:35 PM, Angel Herráez wrote: > ** > Today > http://chemapps.stolaf.edu/jmol/jsmol/test3.htm > is broken, both there and when I download it and test with a fresh > download of the jsmol.zip > > The left-side JSmol

Re: [Jmol-users] Jmol 13.0.9/13.1.9 released

2012-11-26 Thread Simone Sturniolo
Hi, I tried downloading the new 13.1.9 release from Sourceforge, and even compiling the source code for 13.1.10_dev, but I still have bugs with ellipsoids. Now, instead of a dot, I see a large square when I try them. It seems odd to me that it could be system-specific, but just to stay on the safe

Re: [Jmol-users] JSmol -- Are we done?

2012-11-26 Thread Robert Hanson
don't do any conversions. Just let me fix it. On Sun, Nov 25, 2012 at 3:20 PM, Angel Herráez wrote: > With files updated today: > > Yes, "color label" is now working for me. Thanks. > > > > > move 30 0 0 0 0 0 0 0 2;color background black > > > > also worked fine. Maybe you have older files or

Re: [Jmol-users] Jmol 13.0.9/13.1.9 released

2012-11-26 Thread Robert Hanson
send me the offending file, please. I was sure I fixed that. On Mon, Nov 26, 2012 at 5:34 AM, Simone Sturniolo wrote: > Hi, > > I tried downloading the new 13.1.9 release from Sourceforge, and even > compiling the source code for 13.1.10_dev, but I still have bugs with > ellipsoids. Now, instea

[Jmol-users] JSmol fixed

2012-11-26 Thread Robert Hanson
http://chemapps.stolaf.edu/jmol/jsmol.zip http://chemapps.stolaf.edu/jmol/jsmol/test2.htm http://chemapps.stolaf.edu/jmol/jsmol/test3.htm should all be working now. -- Robert M. Hanson Larson-Anderson Professor of Chemistry Chair, Chemistry Department St. Olaf College Northfield, MN http://www

Re: [Jmol-users] Jmol 13.0.9/13.1.9 released

2012-11-26 Thread Simone Sturniolo
I don't have a specific file giving me the problem, I am currently testing the various functionalities we're interested in to write down a quick reference guide for my group. I just try a simple line like: ellipsoid test axes {1.0 0.0 0.0} {0.0 0.5 0.0} {0.0 0.0 0.5} and I get the bug. The latest

Re: [Jmol-users] JSmol -- Are we done?

2012-11-26 Thread Robert Hanson
I forgot to implement that thread. Which reminds me, the NAVIGATE command is not implemented. OK, that is fixed, I think. Please check. I think moveto may have similar problems, but I can't check that now. On Sun, Nov 25, 2012 at 3:20 PM, Angel Herráez wrote: > move 30 0 0 0 0 0 0 0 2;color bac

[Jmol-users] R: JSmol fixed

2012-11-26 Thread pino.stricc...@libero.it
It works fine here on firefox/linux and firefox /mac.Pino Messaggio originale Da: hans...@stolaf.edu Data: 26/11/2012 12.55 A: "jmol-users@lists.sourceforge.net" Ogg: [Jmol-users] JSmol fixed http://chemapps.stolaf.edu/jmol/jsmol.zip http://chemapps.stolaf.edu/jmol/jsmol/test2.htm

Re: [Jmol-users] Jmol 13.0.9/13.1.9 released

2012-11-26 Thread Robert Hanson
On Mon, Nov 26, 2012 at 6:00 AM, Simone Sturniolo wrote: > ellipsoid test axes {1.0 0.0 0.0} {0.0 0.5 0.0} {0.0 0.0 0.5} Ah, OK. I may have missed that. I was testing thermal ellipsoids. -- Robert M. Hanson Larson-Anderson Professor of Chemistry Chair, Chemistry Department St. Olaf College N

Re: [Jmol-users] Jmol 13.0.9/13.1.9 released

2012-11-26 Thread Robert Hanson
I've checked in that correction. Are you compiling Jmol or using the release only? In any case, the very latest is always at http://chemapps.stolaf.edu/jmol/Jmol-13.zip Bob On Mon, Nov 26, 2012 at 9:28 AM, Robert Hanson wrote: > > > On Mon, Nov 26, 2012 at 6:00 AM, Simone Sturniolo < > simones

Re: [Jmol-users] Jmol 13.0.9/13.1.9 released

2012-11-26 Thread Simone Sturniolo
I've tried the version from Sourceforge, the version from your website, and the Subversion source compiled, as they were five hours ago, and they all had the same problem. The new version you just linked works. The set ellipsoidAxes, ellipsoidArcs and ellipsoidDots options still don't seem to work

Re: [Jmol-users] Jmol 13.0.9/13.1.9 released

2012-11-26 Thread Robert Hanson
OK, so check that out again from SVN, and it should all be working. I had never implemented the various display options with nonthermal ellipsoids. On Mon, Nov 26, 2012 at 9:57 AM, Simone Sturniolo wrote: > I've tried the version from Sourceforge, the version from your website, > and the Subver

Re: [Jmol-users] Jmol 13.0.9/13.1.9 released

2012-11-26 Thread Robert Hanson
wait - I am having a problem with that check-in, Simone. On Mon, Nov 26, 2012 at 11:00 AM, Robert Hanson wrote: > OK, so check that out again from SVN, and it should all be working. I had > never implemented the various display options with nonthermal ellipsoids. > > > > On Mon, Nov 26, 2012 at

[Jmol-users] JSmol -- Are we done? Gestures

2012-11-26 Thread Paul Pillot
So many improvements, it's hard to keep pace. I've just (re)tried with an iPad and found out that gestures now work : pinch to zoom, two fingers for a translation. There is even a support for picking measurements through double tap. This is fabulous ! Measurements are tricky : it's difficult to

Re: [Jmol-users] JSmol -- Are we done? Gestures

2012-11-26 Thread Robert Hanson
On Mon, Nov 26, 2012 at 3:18 PM, Paul Pillot < paul.pil...@ac-orleans-tours.fr> wrote: > So many improvements, it's hard to keep pace. > > I've just (re)tried with an iPad and found out that gestures now work : > pinch to zoom, two fingers for a translation. > There is even a support for picking m

[Jmol-users] State Scripts in JSmol

2012-11-26 Thread Evans, Michael James
Jmol'ers, I'm having some trouble with state scripts in JSmol (generated by the latest version of JSmol). Comparable state scripts in Jmol proper work fine. To test, see these two pages, which are identical except for the use of JSmol in the latter. Did I miss a memo? I'm having a tough time deb

Re: [Jmol-users] JSmol -- Are we done? Gestures

2012-11-26 Thread Otis Rothenberger
Bob, This is neat. On a test page using click bond change and click atom change, I can make it work on my iPad. I have to use a stylus because of model size. A bond change using pickcallback seems to require a double tap and an atom change seems to require a single tap. Is that by design? Oti

Re: [Jmol-users] JSmol -- Are we done? Gestures

2012-11-26 Thread Robert Hanson
On Mon, Nov 26, 2012 at 5:26 PM, Otis Rothenberger wrote: > Bob, > > This is neat. > > On a test page using click bond change and click atom change, I can make > it work on my iPad. I have to use a stylus because of model size. > > A bond change using pickcallback seems to require a double tap and

Re: [Jmol-users] State Scripts in JSmol

2012-11-26 Thread Robert Hanson
On Mon, Nov 26, 2012 at 4:57 PM, Evans, Michael James wrote: > Jmol'ers, > I'm having some trouble with state scripts in JSmol (generated by the > latest version of JSmol). Comparable state scripts in Jmol proper work > fine. To test, see these two pages, which are identical except for the use > o

Re: [Jmol-users] State Scripts in JSmol

2012-11-26 Thread Evans, Michael James
Thanks, Bob! You are truly the man. On Nov 26, 2012, at 6:39 PM, Robert Hanson mailto:hans...@stolaf.edu>> wrote: On Mon, Nov 26, 2012 at 4:57 PM, Evans, Michael James mailto:evan...@illinois.edu>> wrote: Jmol'ers, I'm having some trouble with state scripts in JSmol (generated by the latest

Re: [Jmol-users] JSmol -- Are we done? Gestures

2012-11-26 Thread Otis Rothenberger
Ok, my double tap must have been emulating that most of the time. If I touch the stylus to the bond for about 2 seconds, then tap, it works pretty consistently. I guess that touch-hold is a hover. The Resolver optimization on edit works pretty well. It's a bit confusing when I set it to automat

Re: [Jmol-users] minimization using GPU

2012-11-26 Thread Dan Damelin
Actually, were using WebGL directly for computation, not WebCL, so while this still has limitations, it is more widely supported, and will likely be even more available on various systems in the future. Here's a link to an article about our recent work in this area: http://concord.org/publicati