Re: [Jmol-users] testing needed for xml loading

2012-12-10 Thread Robert Hanson
Yes -- same problem. It's a Java2Script compiler error which has an easy work-around but I'm hoping will get fixed so I don't have to do that. Right now it seems to be very specific to these particular XML file types but wouldn't have to be. On Mon, Dec 10, 2012 at 1:05 PM, Otis Rothenberger wrot

Re: [Jmol-users] Gestures

2012-12-10 Thread Robert Hanson
you can turn off anything that is bound. Are we talking about HTML5? You can just go into the JavaScript code in jsmol.js. I think you just have to have Jmol._gestureUpdate(canvas, ev)) return false. On Mon, Dec 10, 2012 at 1:42 PM, Otis Rothenberger wrote: > Bob, > > Is there a command to tu

Re: [Jmol-users] Hello to jmol

2012-12-10 Thread Robert Hanson
On Mon, Dec 10, 2012 at 5:59 PM, LMH wrote: > Hello everyone, > > I am looking to display some chemical structures in a browser and am > wondering if jmol is a good option. I have data that will be queried > from a sqlite database that I want to display in a browser. This will be > sortable, spre

[Jmol-users] Hello to jmol

2012-12-10 Thread LMH
Hello everyone, I am looking to display some chemical structures in a browser and am wondering if jmol is a good option. I have data that will be queried from a sqlite database that I want to display in a browser. This will be sortable, spreadsheet like data in rows with one row per compound. I

[Jmol-users] Gestures

2012-12-10 Thread Otis Rothenberger
Bob, Is there a command to turn off (unbind) gestures other than finger drag? We're trying some iPad stuff where we want only model rotation. Otie -- Otis Rothenberger o...@chemagic.com http://chemagic.com -- LogM

Re: [Jmol-users] lcaoCartoon for CO2

2012-12-10 Thread Pshemak Maslak
I have figured out how to use "isosurface" with "lobe" commands to generate and orient the cartoon orbital lobes. For example: isosurface sp2a color [97 173 62] center (atomno=2) lobe {1 1 -1 0.8}; color $sp2a translucent 4 on; I can even add electron pair dots using "draw circle" and plac

Re: [Jmol-users] testing needed for xml loading

2012-12-10 Thread Otis Rothenberger
On Mac Safari, I now get an error on either of the first two files if I load the water.xodydata first. If I do not load this first, then playing with all three links does not produce an error. Otis -- Otis Rothenberger o...@chemagic.com http://chemagic.com On Dec 10, 2012, at 12:30 PM, Rober

Re: [Jmol-users] testing needed for xml loading

2012-12-10 Thread Robert Hanson
Renjian found the compiler bug, and I've made a change to the VASP reader. That should be fixed now. No errors when loading vasp.xml first, then the others? Maybe? On Mon, Dec 10, 2012 at 6:58 AM, Paul Pillot < paul.pil...@ac-orleans-tours.fr> wrote: > > > > On Chrome MacOSX.6 > no error with va

Re: [Jmol-users] testing needed for xml loading

2012-12-10 Thread Robert Hanson
order of clicking should matter there. But I think I have a fix On Mon, Dec 10, 2012 at 6:58 AM, Paul Pillot < paul.pil...@ac-orleans-tours.fr> wrote: > > > > On Chrome MacOSX.6 > no error with vasp.xml and water.xodydata. > estron.cml reports the following error : > FileManager.getAtomSetCo

Re: [Jmol-users] testing needed for xml loading

2012-12-10 Thread Otis Rothenberger
Paul, You're right. I see that also with both of the other files. If you load estron.cml first, everything seems OK - even going back to estron.cml from one of the other files. This is happening in Safari and Firefox also. Otis -- Otis Rothenberger o...@chemagic.com http://chemagic.com O

Re: [Jmol-users] testing needed for xml loading

2012-12-10 Thread Rolf Huehne
On 12/10/2012 01:22 PM, Robert Hanson wrote: > I'd appreciate people testing > http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?USE=HTML5 for those top > middle links involving loading of XML files (vasp.xml, estron.cml, and > water.xodydata). This uses the browser's own HTML document object model t

Re: [Jmol-users] testing needed for xml loading

2012-12-10 Thread Paul Pillot
That's interesting ! I've made further testing and found out that the sequence of file loading can trigger an error with the cml file ! - reloading the page and : 1. load estron.cml 2. load vasp.xml 3. load water.xodydata causes no error - reloading the page and :

Re: [Jmol-users] testing needed for xml loading

2012-12-10 Thread Otis Rothenberger
Paul, That loads for me on Mac 10.7.5 with Chrome 23.0.1271.95. Otis -- Otis Rothenberger o...@chemagic.com http://chemagic.com On Dec 10, 2012, at 7:58 AM, Paul Pillot wrote: > > > > On Chrome MacOSX.6 > no error with vasp.xml and water.xodydata. > estron.cml reports the following err

Re: [Jmol-users] testing needed for xml loading

2012-12-10 Thread Otis Rothenberger
Bob, Mac Safari, Chrome, and Firefox are OK. Otis -- Otis Rothenberger o...@chemagic.com http://chemagic.com On Dec 10, 2012, at 7:22 AM, Robert Hanson wrote: > I'd appreciate people testing > http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?USE=HTML5 for those top > middle links involvin

[Jmol-users] testing needed for xml loading

2012-12-10 Thread Paul Pillot
On Chrome MacOSX.6 no error with vasp.xml and water.xodydata. estron.cml reports the following error : FileManager.getAtomSetCollectionFromFile(estron.cml) starting HoverWatcher_7 FileManager opening http://chemapps.stolaf.edu/jmol/jsmol/estron.cml The Resolver thinks XmlCml call loadScript org

[Jmol-users] testing needed for xml loading

2012-12-10 Thread Robert Hanson
I'd appreciate people testing http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?USE=HTML5 for those top middle links involving loading of XML files (vasp.xml, estron.cml, and water.xodydata). This uses the browser's own HTML document object model to parse the XML files. It seems to be working on Fire