http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?USE=HTML5
On Sat, Jan 12, 2013 at 12:35 PM, pino.stricc...@libero.it
pino.stricc...@libero.it wrote:
A not so nice discover. While opening the page http://chemapps.stolaf.
edu/jmol/jsmol/test2.htm, my browser tells me that the java applet was
I think we are settling in on HTML5 as the fallback plan. The image idea is
an interesting option, but that does take considerable server-side support
(Jmol running on the server with whatever script is being given it) that
has its own issues.
On Sat, Jan 12, 2013 at 8:22 AM, Angel Herráez
It will probably take some time to sort out what is really the issue here;
apparently it is browser-specific, meaning the Jmol application itself is
not a risk, and I would guess nothing having to do with Jmol is a risk --
other than it could be modified and used as a facade for something else.
OK. I was trying to cover all known variations.
Interestingly, I found that by loading a PNG+Jmol file (saved from the app)
instead of the PDB file, when I specify image as the only option in Info, the
png image is indeed displayed. Nice!
Web page developers using the Jmol applet:
Well, I'm sitting here wondering if the future of the Jmol applet is
written on the wall, and it will soon become a historical artifact. As
platforms shut out the Java plug-in, that certainly seems to be the case.
If nothing else, we are instantly back
yes, that's right. That's definitely a way to go, and what we will probably
be shooting for with sites such as Proteopedia and RCSB.
On Sun, Jan 13, 2013 at 1:10 PM, Angel Herráez angel.herr...@uah.es wrote:
OK. I was trying to cover all known variations.
Interestingly, I found that by
Dear Bob,
Thanks for the comprehensive summary on the state of Jmol applet and
JSmol.
First of all, a huge thanks for the tremendous effort you have put in such a
short time and the extraordinary product you have achieved to make. We all
owe you much.
A few notes of my own to share with
OK, so I have an update of my former Exporting from Jmol applet an image
of the current view method,
http://biomodel.uah.es/Jmol/export-image/
that is now compatible with Jmol-JSO-HTML5 (JSmol), Jmol-JSO-Java and
Jmol-JSO-WebGL
it is temporarily located at
Angel i am trying your new pages with Jsmol http://biomodel.uah.
es/en/noJava/model3/
All is ok with sugars, but when it comes to proteins windows start appearing
with different messages.
Something is not really right there
Pino
Ah -- that reminds me. The one part of Jmol that has not been implemented
in JSmol is language translation. I'm pretty sure that is going to be
impossible without some serious thought. That system creates specialized
Java class files, bypassing the usual Java code stage. We might be able
to do it,
On Sun, Jan 13, 2013 at 2:21 PM, Angel Herráez angel.herr...@uah.es wrote:
Dear Bob,
* JSmol has problems to run from local disk --in contrast to Jmol applet.
You
can find trouble during initialization if you are not using it from a web
server.
A local web server is fine. Users must be
I have not had any problems with this, at least with Firefox. I think what
you say is true for MSIE.
It's also possible that I set some sort of flag to allow that.
No, seriously. I'm using Firefox and the JS libraries do not finish loading
from
local files. I gave up trying to understand
Thank you, Pino
I thought that was updated to the last version, but maybe not. I will check the
files again.
I did have some problems loading some pdb files that gave
format-not-recognised errors. I played a bit with file extensions and gzipped
or not, so I may have it broken.
Right now, both
Thanks for the analysis Bob, I need to add in my thoughts.
First, as far as open source goes, I don't really believe there is any sense of
some competition. Open source provides tools to the community, each is unique
and will be used in unique ways by the community. Some will even use multiple
Bob,
Thanks for all of your hard work on JSmol. What's happened in just a few months
is nothing less than amazing.
I've had the model kit bug ever since I found that I could make atoms in Chime
change color. Your Jmol efforts provided an opportunity to create a real
virtual model kit, and I'm
On Sun, Jan 13, 2013 at 4:59 PM, Kevin Theisen ke...@ichemlabs.com wrote:
Thanks for the analysis Bob, I need to add in my thoughts.
First, as far as open source goes, I don't really believe there is any
sense of some competition. Open source provides tools to the community,
each is unique
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