Yes, the documentation was incorrect. Thanks.
axes LABELS "x-label" "y-label" "z-label" "origin-label"
*Sets the labels for the positive X, Y, Z axes, and the origin.
Negative-directed axes are hidden; empty quotes can be used to hide labels
as desired.*
axes LABELS "x-label" "y-label" "z-labe
sorry about that -- wasn't paying attention...
On Wed, Mar 12, 2014 at 8:01 PM, Angel Herráez wrote:
> Sorry, Bob, I am confused by your 3 replies which look contradictory.
>
> 1. So, "write coord XYZ" is not possible. What is then what you put back?
>
Correct. The documentation is correct now
The doc says I can specify custom labels for +X +Y +Z -X -Y -Z and the
origin
When I enter the 7 values I get
script ERROR: bad argument count
6 are OK, 3 are ok and have the useful effect of displaying only the positive
part of the axes lines. That should be added to the doc.
However, they al
Sorry, Bob, I am confused by your 3 replies which look contradictory.
1. So, "write coord XYZ" is not possible. What is then what you put back?
2. Reading a PyMOL file will change what from the default? And "initialize"
resets what?
3. Shame for the clipboard! I am testing in Java but was aim
Yes, the documentation is incorrect. It should read:
Writes a file including only the previously selected atoms, modifying the
coordinates to the current view if the file type is one of: CD, JSON, MOL,
SDF, V2000, or V3000.
Bob
On Wed, Mar 12, 2014 at 6:50 PM, Angel Herráez wrote:
> My test
WRITE Clipboard. Pretty sure that is one of the few losses of going
JavaScript. Signed/All-Permissions applet or application only.
On Wed, Mar 12, 2014 at 7:06 PM, Robert Hanson wrote:
> Looks like I inadvertently removed that when I was working on the PyMOL
> reader last June. Putting it bac
Looks like I inadvertently removed that when I was working on the PyMOL
reader last June. Putting it back in seems to have no other effect than
that reading a PyMOL file will change it from the Jmol default. The
INITIALIZE command, though, resets it.
OK, it's back.
Bob
On Wed, Mar 12, 2014 at
JSmol users:
Please consider writing a review for JSmol --
https://sourceforge.net/projects/jsmol/
Only two there right now!
Bob
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first wh
My tests suggest that "write coord" will output modified coordinates (as the
doc says)
write coord ex.mol != write mol ex.mol = write ex.mol
but only when MOL format is used, however when XYZ is chosen the output
is always the same, original unmodified coordinates. Is that so?
write coord ex.x
Must be a documentation error -- you need quotes around the file name in an
isosurface command. The load, script, and write commands are special in
that regard, but the isosurface command is so complicated it needs quotes.
On Wed, Mar 12, 2014 at 1:15 PM, Dale Tronrud wrote:
> Hi,
>
>I'm a
Hi,
I'm a newbie to the jmol world and have been very impressed by
what I've seen so far. I'm starting with a little web app to display
a bit of a protein along with its electron density map.
I'm using version 14.0.11. The documentation web page at
http://chemapps.stolaf.edu/jmol/docs/?v
I have released a version of JSmol that should work fine for MSIE from a
local page in HTML5. If you need to use a local installation that works in
MSIE, this is for you.
http://chemapps.stolaf.edu/jmol/zip/jmol-14.1.12_2014.03.11.zip
This includes an upgrade to jQuery 1.11.0, which I had to hack
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