Re: [Jmol-users] display only H-bonds?

Hi Victor Yes, if you hide an atom the bond goes away because it depends on the atom. But you can e.g. make the atoms very small: wireframe off; spacefill 0.01; hbonds 0.2; or even spacefill 0; -- HPCC Systems Open

[Jmol-users] display only H-bonds?

Hello everybody, Let us say that I have a molecule with a bunch of H-bonds. I would like to visualize the structure of the H-bonds, to look for patterns. Is there some way to visualize only the H-bonds, hiding the atoms? I tried using "hide oxygen" but when the atoms dissapear so do the H-bonds

Re: [Jmol-users] is there a way to undisplay Jmol_S on the applet?

On 06/18/2014 03:33 PM, Angel Herráez wrote: > So you will have to live with the Jmol_S frank. Is that too much of a > problem? > The 'frank' also serves as a fallback mechanism to open the popup menu with the left (primary) mouse button instead of the right (secondary) mouse button. This helps i

Re: [Jmol-users] is there a way to undisplay Jmol_S on the applet?

Yes what you say is true, logo Jmol_S is not a problem. But I'm an enthusiast, just trying to find if there is any way !! I see that there is noway to disable logo. So yeah I'll take it.. Thanks for you time.. Ravi On 18 June 2014 19:03, Angel Herráez wrote: > As I understand it, now using non

Re: [Jmol-users] is there a way to undisplay Jmol_S on the applet?

As I understand it, now using non-signed applet is not recommended. In the old Java versions, the unsigned applets run without asking. Nowadays you get warning or blocking for them, so it is not much difference (in inconvenience for the user) to use the signed applet which of course asks the us

Re: [Jmol-users] is there a way to undisplay Jmol_S on the applet?

Thanks for pointing it out Pshemak, but unfortunately, mostly scientists/beginners are not developers/IT people to resolve that by themselves. Its a real issue when the viewer is used by the beginner !! Thats the only reason im looking for singned applet. RR On 18 June 2014 17:14, Pshemak Mas

Re: [Jmol-users] is there a way to undisplay Jmol_S on the applet?

On 6/18/2014 7:20 AM, Ravi Raja Merugu wrote: Thanks Angel, Thats what I thought . But unfortunately I cant import files from RCSB server if I use unsigned applets right !! and how to fix that !!, and recently JAVA applets are being blocked for security issues, if they are unsigned by almost a

Re: [Jmol-users] is there a way to undisplay Jmol_S on the applet?

Dear Rolf and jaime, I talked to my web hosting providers and they say currently my website is not accessible for few of international countries. They might fix this in few hrs. I will update when its done, On 18 June 2014 16:33, Jaime Prilusky wrote: > Nameserver is unable to translate www.r

Re: [Jmol-users] is there a way to undisplay Jmol_S on the applet?

Thanks Angel, Thats what I thought . But unfortunately I cant import files from RCSB server if I use unsigned applets right !! and how to fix that !!, and recently JAVA applets are being blocked for security issues, if they are unsigned by almost all the Operating systems. Any quick fix for this i

Re: [Jmol-users] JSmol write protected Console?

Yes, I think I saw that yesterday, while I was testing several versions for chasing another problem, so I'm not sure which one it was. But it sound like the same. El 18 Jun 2014 a las 10:32, Jaime Prilusky escribió: > >From my server with Jmol 14.2.0_2014.06.13 and 14.0.17_2014.06.09 , > the

Re: [Jmol-users] is there a way to undisplay Jmol_S on the applet?

To clarify: "set frank off" is the way to do it, but DOES NOT APPLY to signed Jmol/Java applet from a web server. I understand this is for security reasons, being a signed applet it is a reminder of what is being displayed there. The documentation says so: http://chemapps.stolaf.edu/jmol/doc

Re: [Jmol-users] is there a way to undisplay Jmol_S on the applet?

Thanks for the info, let me talk to my web hosting providers people and fix the issue. Please give me some time !! Ravi On 18 June 2014 16:33, Jaime Prilusky wrote: > Nameserver is unable to translate www.rsquarelabs.com into a valid IP > address > Can you provide the IP of the server? > > J

Re: [Jmol-users] is there a way to undisplay Jmol_S on the applet?

Dear Rolf, I used Jena 3D viewer, its pretty handy n documented. But I see that JAVA version of the applets/viewer in your server suffers the same, I cant undisplay the logo for JAVA version !! using "set frank off" , bt i can do the same in HTML5 . is this expected ? If I remeber correctly, I rea

Re: [Jmol-users] is there a way to undisplay Jmol_S on the applet?

Nameserver is unable to translate www.rsquarelabs.com into a valid IP address Can you provide the IP of the server? Jaim On Jun 18, 2014, at 1:53 PM, Ravi Raja Merugu mailto:raviraja.mer...@gmail.com>> wrote: Yes, the url is correct, I rechecked the address, it's pu

Re: [Jmol-users] is there a way to undisplay Jmol_S on the applet?

On 06/18/2014 12:53 PM, Ravi Raja Merugu wrote: > Yes, the url is correct, I rechecked the address, it's publicly available > and I'm able to access it !!, its http://www.rsquarelabs.com/bmv im able > to access it from india, I'm not sure if this domain is blocked in your > place !!(thats unlikely

Re: [Jmol-users] is there a way to undisplay Jmol_S on the applet?

Yes, the url is correct, I rechecked the address, it's publicly available and I'm able to access it !!, its http://www.rsquarelabs.com/bmv im able to access it from india, I'm not sure if this domain is blocked in your place !!(thats unlikely though!). Please tell me if you still cant access the w

Re: [Jmol-users] is there a way to undisplay Jmol_S on the applet?

On 06/18/2014 12:23 PM, Ravi Raja Merugu wrote: > Interesting !! set frank off works on your site,, but I see that you are > using jsmol.min.js, but im loading JsmolCore.js, JsmolApplet.js etc. Is > that the rreason ? anyways ,. i will try with Jsmol.min.js and see.. > http://rsquarelabs.com/bmv .

[Jmol-users] JSmol write protected Console?

>From my server with Jmol 14.2.0_2014.06.13 and 14.0.17_2014.06.09 , the lower >panel of Console from JSmol applet is write protected, i.e. can’t type >commands to be executed. On Jmol 14.1.16 it was Ok. Can others reproduce this? Jaim * 14.2.0_2014.06.1 ---

Re: [Jmol-users] is there a way to undisplay Jmol_S on the applet?

Interesting !! set frank off works on your site,, but I see that you are using jsmol.min.js, but im loading JsmolCore.js, JsmolApplet.js etc. Is that the rreason ? anyways ,. i will try with Jsmol.min.js and see.. http://rsquarelabs.com/bmv . this is my website where i couldnt set the frank off.

Re: [Jmol-users] is there a way to undisplay Jmol_S on the applet?

simply "frank off" should also work. Jaim On Jun 18, 2014, at 1:04 PM, Rolf Huehne wrote: > On 06/18/2014 11:50 AM, Ravi Raja Merugu wrote: >> Hello everyone, >> >> Is there a way i can undisplay Jmol_S logo on the viewer in the right >> bottom, Is there any option like "set frank off/false"

Re: [Jmol-users] is there a way to undisplay Jmol_S on the applet?

On 06/18/2014 11:50 AM, Ravi Raja Merugu wrote: > Hello everyone, > > Is there a way i can undisplay Jmol_S logo on the viewer in the right > bottom, Is there any option like "set frank off/false" like the one used to > be in Jmol-13x. I can give full credentials to the Jmol on the about > section

[Jmol-users] is there a way to undisplay Jmol_S on the applet?

Hello everyone, Is there a way i can undisplay Jmol_S logo on the viewer in the right bottom, Is there any option like "set frank off/false" like the one used to be in Jmol-13x. I can give full credentials to the Jmol on the about section, but I just want to remove the Jmol_S text on the right bo