Re: [Jmol-users] Jmol 14.x.4 released

Hi again, Is there likely to be a newer Maven artifact released soon? I’ve been waiting since 2013 for one..! The most recent versions here and here are very old.

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

…actually, what confused me slightly is that it was working last week. I’ve just realised I was pointing to stolaf’s server in the serverURL rather than ours (we must have a stricter memory limit set). I’d never thought in detail about Same Origin Policy rules – but obviously Chrome allows javas

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

Thanks – this now works (although in the download below the print statements still weren’t removed – I had to do it manually myself). Did you also make any changes to the PHP file? I’m trying to work out if the error I’m now seeing (Fatal error: Allowed memory size of 8388608 bytes exhausted (

Re: [Jmol-users] molecular dipoles

The puzzle is partially solved. It looks like the problem with dipoles originates in (some) spartan files that were saved as mol2 files with partial charge information included. I am still trying to figure out what the problem is with these spartan files (they definitely have charge informati

[Jmol-users] R: Re: R: Re: Save problems

Bob, it is not working. It asks if the name is ok but it doesnt open a new dialog box and it doesnt save. I dont remember if it used to work before . Pino Messaggio originale Da: hans...@stolaf.edu Data: 10/09/2014 13.21 A: "pino.stricc...@libero.it", "jmol-users@lists.sourceforge

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

I had just enough time before a meeting to do that myself: http://chemapps.stolaf.edu/jmol/zip/jmol-14.3.7_2014.09.10b.zip On Wed, Sep 10, 2014 at 7:37 AM, Robert Hanson wrote: > If you edit jsmol/j2s/JU/BinaryDocument.js > > and remove this line: > > System.out.println (t); > > it will go fast

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

If you edit jsmol/j2s/JU/BinaryDocument.js and remove this line: System.out.println (t); it will go faster, I think. Maybe also in jsmol/j2s/core/corebinary.js, carefully remove: System.out.println(a); On Wed, Sep 10, 2014 at 7:33 AM, Robert Hanson wrote: > Well, one thing I forgot was to

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

Well, one thing I forgot was to remove a debug comment that is printing every integer read. So that will slow things down VERY much in JSmol/HTML5. Sorry about that. But also it looks like in applet1 you have sosurface1 created with cutoff=0.5 min=0 max=0.4541953206062317; so you just need to r

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

Hmm… I’ve uploaded this new version of JSmol, and I now get an error with the original 1cbs.cif example, and the map for my 2 example fails to load – “loading map file…” displays indefinitely: http://www.ccpem.ac.uk/jsmol_test/cutofftest.htm - is there something else I’ve missed? Chris From

Re: [Jmol-users] R: Re: Save problems

try pointing to http://chemapps.stolaf.edu/jmol/jsmol/jsmol.php On Wed, Sep 10, 2014 at 5:56 AM, pino.stricc...@libero.it < pino.stricc...@libero.it> wrote: > Bob, i just tried to be sure. When i ask to save there is a message asking > the name of file. Then nothing else. It should come up wit

Re: [Jmol-users] R: Re: Save problems

http://chemapps.stolaf.edu/jmol/jsmol/php/jsmol.php On Wed, Sep 10, 2014 at 6:21 AM, Robert Hanson wrote: > try pointing to http://chemapps.stolaf.edu/jmol/jsmol/jsmol.php > > > > On Wed, Sep 10, 2014 at 5:56 AM, pino.stricc...@libero.it < > pino.stricc...@libero.it> wrote: > >> Bob, i just tr

[Jmol-users] R: Re: Save problems

Bob, i just tried to be sure. When i ask to save there is a message asking the name of file. Then nothing else. It should come up with an option to save or to open as i saw on ur site. I wonder if the position of jsmol.php is correct. I created a directory inside wordpress php and i put the same