If you edit jsmol/j2s/JU/BinaryDocument.js
and remove this line:
System.out.println (t);
it will go faster, I think. Maybe also in jsmol/j2s/core/corebinary.js,
carefully remove:
System.out.println(a);
On Wed, Sep 10, 2014 at 7:33 AM, Robert Hanson <hans...@stolaf.edu> wrote:
> Well, one thing I forgot was to remove a debug comment that is printing
> every integer read. So that will slow things down VERY much in JSmol/HTML5.
> Sorry about that.
>
> But also it looks like in applet1 you have
>
> sosurface1 created with cutoff=0.5 min=0 max=0.4541953206062317;
>
> so you just need to remove that cutoff:
>
> isosurface downsample 2 *cutoff 0.5* boundbox 'data/1akeA_10A.mrc' mesh
> nofill
>
>
>
>
>
> On Wed, Sep 10, 2014 at 6:44 AM, <chris.w...@stfc.ac.uk> wrote:
>
>> Hmm… I’ve uploaded this new version of JSmol, and I now get an error
>> with the original 1cbs.cif example, and the map for my 2 example fails to
>> load – “loading map file…” displays indefinitely:
>> http://www.ccpem.ac.uk/jsmol_test/cutofftest.htm - is there something
>> else I’ve missed?
>>
>>
>>
>> Chris
>>
>>
>>
>>
>>
>> *From:* Robert Hanson [mailto:hans...@stolaf.edu]
>> *Sent:* 08 September 2014 20:28
>> *To:* jmol-users@lists.sourceforge.net
>> *Subject:* Re: [Jmol-users] Setting cutoff with some maps causes map to
>> fail to load
>>
>>
>>
>> rebooting on this issue after fixing a possibly related problem --
>> http://chemapps.stolaf.edu/jmol/zip/jmol-14.3.7_2014.09.08b.zip
>>
>>
>> Jmol.___JmolVersion="14.3.7_2014.09.08"
>>
>> bug fix: binary document reader can skip bytes if an http connection
>> fails to deliver the full set of requested bytes in one operation
>> (methods used only by nonstandard MRC files and PyMOL session
>> files)
>>
>>
>>
>>
>> ------------------------------------------------------------------------------
>> Want excitement?
>> Manually upgrade your production database.
>> When you want reliability, choose Perforce
>> Perforce version control. Predictably reliable.
>>
>> http://pubads.g.doubleclick.net/gampad/clk?id=157508191&iu=/4140/ostg.clktrk
>> _______________________________________________
>> Jmol-users mailing list
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>>
>>
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> Chair, Department of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Department of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
Want excitement?
Manually upgrade your production database.
When you want reliability, choose Perforce
Perforce version control. Predictably reliable.
http://pubads.g.doubleclick.net/gampad/clk?id=157508191&iu=/4140/ostg.clktrk
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