Re: [Jmol-users] updating SpectralZoo pages

2016-06-09 Thread Otis Rothenberger
Hi Again Jennifer, I spent some time looking at your code. You have a lot going on with JQuery, JQuery UI widgets, and Bootstrap. I think I see other possible conflicts in addition to the possible unquote attribute issue. You are loading your own version of JQuery (along with the UI Widgets).

Re: [Jmol-users] updating SpectralZoo pages

2016-06-09 Thread Otis Rothenberger
Jennifer, Although you do not have to quote attributes in HTML5, there are reports of issues when quotes are not used. Note your JSmol id below: Before you start an exhaustive problem search, why don’t you just try quoting that id to make sure that your not experiencing an issue with this

Re: [Jmol-users] updating SpectralZoo pages

2016-06-09 Thread Eric Martz
New versions of JSmol are supposed to be backwards compatible. There are very few intentional changes that require changes in the JSmol command scripts, generally quite minor. It would be good to "set debugscript on" and see where the errors occur. If you are still stumped, copy the error

[Jmol-users] updating SpectralZoo pages

2016-06-09 Thread Jennifer L. Muzyka
We recently got a new server to host the SpectralZoo (http://chemserv.centre.edu/muzyka/spectralzoo), with new versions of PHP and MySQL. Some of my SpectralZoo scripts broke, so I thought it might be time to upgrade the Jmol (actually JSmol) that I’m using on the site. I see even more

Re: [Jmol-users] How to change the boundary of cells in Jmol?

2016-06-09 Thread Angel Herráez
Hello Vincent Try reading these: http://chemapps.stolaf.edu/jmol/docs/#loadcrystallographicoptions http://chemapps.stolaf.edu/jmol/docs/#unitcell > Recently I try to visualize a periodic cell in Jmol, but it seems that > the boundaries of the cell is > automatically set to be from 0

[Jmol-users] How to change the boundary of cells in Jmol?

2016-06-09 Thread Song, Wenshen
Hello! Recently I try to visualize a periodic cell in Jmol, but it seems that the boundaries of the cell is automatically set to be from 0 to 1 in every direction. How can I change the settings, like, to show the cell in (-0.5, 0.5) in x,y,z direction? Thanks! Yours, Vincent