[Jmol-users] JMol Applet :Download PDB file using a button

Greetings all, In my JSP page, I have embbeded Jmol applet and I want to add a Jmol button which user can download the PDB file. Any tips on how to do this ? thanks in advance, umanga -- Download Intel® Parallel Studio

Re: [Jmol-users] Using JMol functions in the Applet?

Greetings all, Its ok ..I found the solution ;) Ashika Umanga Umagiliya wrote: > Greetings all, > > I have following JMol function.How to embed this into my JMol applet? > > During the JMol initialization,I want to save the returned residues in a > varible. > something li

[Jmol-users] Using JMol functions in the Applet?

Greetings all, I have following JMol function.How to embed this into my JMol applet? During the JMol initialization,I want to save the returned residues in a varible. something like: cdr3=selectCDR("a",97,115) Later, when user check/uncheck a JMol checkbox I want to change the color of these r

[Jmol-users] Yellow and White CARTOON coloring scheme ?

I want to get the default coloring scheme of Cartoon (Yellow and white scheme that I get ,when go trough Appliet menu->style->scheme->Cartoon ) in my applet. I load model using: jmolInitialize("jmol/"); jmolApplet(580, "load <%=homologyFile%>; cpk off; wireframe off; ribbons off ; cartoons on;

[Jmol-users] Multiple viewports in JMol?

Greetings all, I want to display multiple 5 PDB files in the same JSP.Is there something like multiple viewports in JMol? Thanks in advance, Umanga -- Open Source Business Conference (OSBC), March 24-25, 2009, San Franc

Re: [Jmol-users] Reset the view ?

Hi Angel , Thank you for the tip, but I noticed that "write state" doesn't support in the Applet version? Best regards, umanga Angel Herraez wrote: > Hi Umanga > > When you have the initial view as you want it, use > show state > and store that script (in an internal variable* or saved to

[Jmol-users] Reset the view ?

Greetings all, In my application (using JMol applet ) I have several buttons to select CDR3,epitope regions ,color some chains...etc Now I want to add a 'Reset' button which will reset the colors,structure as it had first time the model was being loaded. I noticed that "reset" command only reset

Re: [Jmol-users] Optimizing Jmol select query ?

hi Herráez, The residue numbers are relative to the chain, that is 152th residue of Chain T...and so on.. By your proposed method is doesn't select the residue number 152th in Chain T , it select just the residue number with index 152 from all the residues. Thank and best regards, umanga He

[Jmol-users] Optimizing Jmol select query ?

Greetings all, In my application I want to highlight residues of the epitope chain. Say for example : epitope chain is T and the residue numbers are 152,166,167,168,169 ,207..etc So I generate a query something like: select {:T} (_x.resno - within("chain", _x)[1].resno =152 ) OR (_x.resno - w

[Jmol-users] one Label for a group of residues

Greetings, I want to display a label to a group of residues. say I select residues as: >select :a and (resno>10 and resno<50); Then I want to display a label showing "Selection". If i do: >label "Selection" the label is shown on top of every atom. How to display only one label for the selection

[Jmol-users] Select relative residue numbers in a chain

Greetings all, I want to select the CDR3 region.The CDR3 region is calculated and stored excel file as follows: PDBID | CHAIN | Length | Sequence | CDR3 1uj3 A 215DI 98 lqhgespyt 97 1uj3 B 217Q