: Wednesday, February 24, 2010 9:53 PM
Subject: Re: [Jmol-users] 11.9.25 secondary structures bug
Fixed for Jmol 11.8.19 and Jmol 11.9.31. Files for 11.9 will be uploaded soon
to http://chemapps.stolaf.edu/jmol/docs/examples-11/Jmol-11.zip; release of
11.8.19 will be later this week.
Bob
Fixed for Jmol 11.8.19 and Jmol 11.9.31. Files for 11.9 will be uploaded
soon to http://chemapps.stolaf.edu/jmol/docs/examples-11/Jmol-11.zip;
release of 11.8.19 will be later this week.
Bob
On Wed, Feb 24, 2010 at 3:33 PM, Robert Hanson wrote:
> Hmm, yeah, that's a bug... The cheese-puff effe
Hmm, yeah, that's a bug... The cheese-puff effect is because you have
defined the size of the cartoon in the range after the specified residues,
and Jmol has removed the helix description for those residues. Basically, if
10-20 are helixes
and you display cartoons and then redefine a subset of the
Hi Bob,
This got lost in my Jmol-users mail folder. Sorry for the delay in
responding.
This doesn't show a bug in ribbons and does what I expect:
subset {12-13}; select {12-13}; structure HELIX {{12-13}}; color
ribbons structure; ribbons 30;
This shows the bug in cartoons and doesn't d
Can you just give me the commands, please?
Maybe show history after that.
On Tue, Feb 9, 2010 at 9:31 AM, Charles Shubert wrote:
> Thanks for getting back to me so quickly, Bob!
>
> Here is an app that demonstrates the bug. Put 1crn.pdb in the same
> directory as this program.
>
> Thanks,
>
> -
Thanks for getting back to me so quickly, Bob!
Here is an app that demonstrates the bug. Put 1crn.pdb in the same
directory as this program.
Thanks,
--Chuck
import java.awt.Dimension;
import java.awt.Graphics;
import java.awt.Rectangle;
import javax.swing.JFrame;
import org.jmol.adapter.
If you have more than one model, 11.9.25 will not work.
On Mon, Feb 8, 2010 at 4:39 PM, Robert Hanson wrote:
> We'll need a file and a set of script commands - certainly doesn't do it
> with:
>
> load =1crn
> select helix
> cartoons on
> select 12-16
> cartoons on
>
> Bob
>
>
> On Mon, Feb 8, 20
We'll need a file and a set of script commands - certainly doesn't do it
with:
load =1crn
select helix
cartoons on
select 12-16
cartoons on
Bob
On Mon, Feb 8, 2010 at 2:17 PM, Charles Shubert wrote:
> This is a bug that has been in Jmol for a while.
>
> Steps to reproduce the bug:
>
> 1. Selec
Hi Chuck
I cannot reproduce what you see, so I must understanding something wrong.
Can you provide the sequence of scripts that you are using?
--
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Sta
This is a bug that has been in Jmol for a while.
Steps to reproduce the bug:
1. Select a set of residues from a helix
2. Render cartoons (See the set of residues from a helix as a cartoon.)
3. Select a small subset of residues of the initial set of residues
4. Render cartoons (See the small subse
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