...@lists.sourceforge.net>>
wrote:
Date: Wed, 3 Mar 2010 10:33:13 -0600
From: Robert Hanson mailto:hans...@stolaf.edu>>
Subject: Re: [Jmol-users] Combining frame and Connect in Animations?
To: jmol-users@lists.sourceforge.net<mailto:jmol-users@lists.sourceforge.
ah,
connect 1.0 1.2 (carbon and model >=1.3 AND model <= 1.6) (hydrogen) single
On Wed, Mar 3, 2010 at 10:32 AM, Robert Hanson wrote:
> I recommend using */1.3 notation for specific frames:
>
> connect 1.0 1.2 (carbon and */1.3) (hydrogen and */1.2) single
>
> connect 1.0 1.2 (carbon and mode
I recommend using */1.3 notation for specific frames:
connect 1.0 1.2 (carbon and */1.3) (hydrogen and */1.2) single
connect 1.0 1.2 (carbon and model >=1.3 or model <= 1.6) (hydrogen) single
You don't need the model specification on both, because Jmol will not
automatically connect bonds betwee
Hi Nick
I think you can do it by including the model/frame spec in the atom expression,
either */1,
*/2 syntax or model=1.1, model=1.2
Say
connect 1.0 1.2 (carbon and model<3) (hydrogen and model<3) single
connect 1.0 1.2 (carbon and model>=3) (hydrogen and model>=3) partial
connect 1.0 1.2 (
In animations of organic chemical reaction mechanisms we need to be able to
display different bond types (Partial, SIngle, Aromatic, etc.) in different
stages of the reaction. We have achieved this by using connect 1.0 1.2 (carbon)
(hydrogen) PARTIAL CREATE or similar. Thus as the bond length ch
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