Everything works fine for me with the latest Jmol 13.1.4 (2012-09-09 00:32). As
well as extended polyhedra command.
On 09/13/12 18:16, Robert Hanson wrote:
Isn't the latest version 13.1.5?
On Tue, Sep 11, 2012 at 7:29 PM, Pshemak Maslak p...@chem.psu.edu
mailto:p...@chem.psu.edu wrote:
On 9/13/2012 12:16 PM, Robert Hanson wrote:
Isn't the latest version 13.1.5?
I am confused. Where can I find 13.1.5?
The bleeding edge ( http://chemapps.stolaf.edu/jmol/) is 13.1.4 HOLD 2012.
PM
On Tue, Sep 11, 2012 at 7:29 PM, Pshemak Maslak p...@chem.psu.edu
mailto:p...@chem.psu.edu
Oh, OK. Well, we'll get that fixed.
On Fri, Sep 14, 2012 at 12:39 PM, Pshemak Maslak p...@chem.psu.edu wrote:
On 9/13/2012 12:16 PM, Robert Hanson wrote:
Isn't the latest version 13.1.5?
I am confused. Where can I find 13.1.5?
The bleeding edge ( http://chemapps.stolaf.edu/jmol/)
I use .jar file of Jmol 13.1.4_HOLD (2012-09-08 11:05) with .xyz and .cif files.
I tried following commands, as well as selecting from the menu:
set picking atom
set picking site
Distance and angle measurements also not working.
NB
On 09/12/12 02:09, Robert Hanson wrote:
working OK for me.
Isn't the latest version 13.1.5?
On Tue, Sep 11, 2012 at 7:29 PM, Pshemak Maslak p...@chem.psu.edu wrote:
**
On 9/11/2012 8:09 PM, Robert Hanson wrote:
working OK for me. Is this app or applet? What script commands are you
giving Jmol to request select atoms with the mouse?
Tested on the
It is unable to select atoms using mouse, and there is no hint with atom ID
and number when cursor hangs at atom. Rotation with left click, and right
click menu work. Same on both mac os and linux.
2012/9/11 Robert Hanson hans...@stolaf.edu
details?
On Tue, Sep 11, 2012 at 11:36 AM, Nikolay
On 9/11/2012 8:09 PM, Robert Hanson wrote:
working OK for me. Is this app or applet? What script commands are you
giving Jmol to request select atoms with the mouse?
Tested on the *desktop only* 13.1.4 HOLD (2012-9-8) with .spartan files
The atom labels do not show on hover.
The files
I'm trying to make a figure showing the coordination of metal ions in crystal -
they form network of tetrahedra. I can do this with bonds, but the
figure looks confusing. It would be much more clear with opaque tetrahedrons.
As I understand Jmol builds polyhedra around some central atoms, which
Nikolay, maybe you can add a dummy atom at the center, produce the
tetrahedron and then hide the atom.
Not very clean, but probably effective
I cannot advise however about generating the tetrahedron around the fake
atom
The polyhedron needs a central atom. But you can add that yourself. The
command appears to be undocumented --
assign {attachmentAtom} Symbol {x y z}
For example:
assign atom {atomno=14} Cl {2 3 4}
That position {2 3 4} could also be an average position of a number of
atoms:
assign atom
On 9/7/2012 1:03 PM, Robert Hanson wrote:
The polyhedron needs a central atom. But you can add that yourself.
The command appears to be undocumented --
assign {attachmentAtom} Symbol {x y z}
For example:
assign atom {atomno=14} Cl {2 3 4}
That position {2 3 4} could also be an average
OK, here's how it works. This is probably not documented, but it is the way
the state works, so it is fine to use it.
All polyhedra need a reference atom, but that atom can be any atom,
including one of the face atoms. It doesn't have to be a central atom.
The key is the (undocumented) TO option:
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