Re: [Jmol-users] camera dependent slab setting

2010-09-07 Thread Alexander Rose
Hi, - Ursprüngliche Mail - > Von: "Robert Hanson" > An: jmol-users@lists.sourceforge.net > Gesendet: Sonntag, 5. September 2010 05:28:13 > Betreff: Re: [Jmol-users] camera dependent slab setting > OK, it's > > set slabRange 5.0 > > -- As long

Re: [Jmol-users] camera dependent slab setting

2010-09-04 Thread Robert Hanson
e.de> wrote: > >> Hi, >> >> - Ursprüngliche Mail - >> > Von: "Robert Hanson" >> > An: jmol-users@lists.sourceforge.net >> > Gesendet: Freitag, 3. September 2010 16:46:50 >> > Betreff: Re: [Jmol-users] camera dependent slab

Re: [Jmol-users] camera dependent slab setting

2010-09-04 Thread Alexander Rose
oo!. Applet 3 then is also in navigation > > mode but with visualRange set to 1 so that the notorious atom is not > > clipped automatically and obscures the view again, the reflection is > > nice though. I hope this makes my intention clear. > > > > > > Best &

Re: [Jmol-users] camera dependent slab setting

2010-09-03 Thread Robert Hanson
, Alexander Rose wrote: > Hi, > > - Ursprüngliche Mail - > > Von: "Robert Hanson" > > An: jmol-users@lists.sourceforge.net > > Gesendet: Freitag, 3. September 2010 16:46:50 > > Betreff: Re: [Jmol-users] camera dependent slab setting > > It seems to

Re: [Jmol-users] camera dependent slab setting

2010-09-03 Thread Alexander Rose
Hi, - Ursprüngliche Mail - > Von: "Robert Hanson" > An: jmol-users@lists.sourceforge.net > Gesendet: Freitag, 3. September 2010 16:46:50 > Betreff: Re: [Jmol-users] camera dependent slab setting > It seems to me that is what the standard SLAB command is for. Righ

Re: [Jmol-users] camera dependent slab setting

2010-09-03 Thread Robert Hanson
st > Alexander > > > ps: congrats for your jmol related publication! > > - Ursprüngliche Mail - > > Von: "Robert Hanson" > > An: jmol-users@lists.sourceforge.net > > Gesendet: Mittwoch, 25. August 2010 15:58:20 > > Betreff: Re: [Jmol-users] ca

Re: [Jmol-users] camera dependent slab setting

2010-09-03 Thread Alexander Rose
your jmol related publication! - Ursprüngliche Mail - > Von: "Robert Hanson" > An: jmol-users@lists.sourceforge.net > Gesendet: Mittwoch, 25. August 2010 15:58:20 > Betreff: Re: [Jmol-users] camera dependent slab setting > I thought that was what you meant -- the

Re: [Jmol-users] camera dependent slab setting

2010-08-25 Thread Robert Hanson
from somehow setting the zoom > and the possible zoom range. That is with 12.0.8. > > > Alex > > - Ursprüngliche Mail - > > Von: "Robert Hanson" > > An: jmol-users@lists.sourceforge.net > > Gesendet: Dienstag, 24. August 2010 22:24:17 > > Be

Re: [Jmol-users] camera dependent slab setting

2010-08-25 Thread Alexander Rose
; An: jmol-users@lists.sourceforge.net > Gesendet: Dienstag, 24. August 2010 22:24:17 > Betreff: Re: [Jmol-users] camera dependent slab setting > Indeed! > > set rotationRadius (Angstroms) > > > > Sets the nominal rotation radius for the model effectively setting the > size

Re: [Jmol-users] camera dependent slab setting

2010-08-24 Thread Robert Hanson
Indeed! set rotationRadius (Angstroms) *Sets the nominal rotation radius for the model effectively setting the size of the model at zoom 100. Normally set to the radius that will contain within the screen the entire model when rotated relative to the default rotation center. * :) Bob On Mon,

Re: [Jmol-users] camera dependent slab setting

2010-08-23 Thread Alexander Rose
Hi, - Ursprüngliche Mail - > Von: "Robert Hanson" > An: jmol-users@lists.sourceforge.net > Gesendet: Freitag, 20. August 2010 20:15:18 > Betreff: Re: [Jmol-users] camera dependent slab setting > Great idea! Exactly. The standard view is like looking through

Re: [Jmol-users] camera dependent slab setting

2010-08-20 Thread Robert Hanson
Great idea! Exactly. The standard view is like looking through a telescope. Still have atoms between you and the focal point. What you want is to "be there" with no telescope. This is called set navigationMode :) Bob On Fri, Aug 20, 2010 at 1:01 PM, Alexander Rose wrote: > Hi, > > I'm trying

[Jmol-users] camera dependent slab setting

2010-08-20 Thread Alexander Rose
Hi, I'm trying to get some nice settings for viewing specific parts of (large) proteins. When you view a protein at a level of atomic detail (ball and stick) and you dive into the protein it happens that atoms and bonds that obstruct the view on the parts you want to focus, because they are in