Hi Sébastien,
It's certainly possible to align genomes of that size with
progressiveMauve, but your computer will need enough RAM and disk
space, and you will need some patience. I would suggest using entirely
default parameters at first (--seed-family will use extra RAM & compute
time), and it wou
Hi everybody,
First try with progressiveMauve, and I got this error.
I'm trying to align two de novo assembly genome of Brassica napus on its
reference (850 MB).
It seems that something goes wrong on the first steps.
./progressiveMauve --seed-family --seed-weight 41 $REF_FASTA
$ASS_PATH/aviso.
