Re: [Mauve-users] Export GAPS

2016-09-20 Thread Joseph Fass
idade Universitária > São Paulo, SP, CEP 05508 270, Brasil > > > > -- > > ___ > Mauve-users mailing list > Mauve-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listi

Re: [Mauve-users] New SNP file format?

2016-07-14 Thread Joseph Fass
Parallel Programming The Go Parallel Website, > sponsored > by Intel and developed in partnership with Slashdot Media, is your hub for > all > things parallel software development, from weekly thought leadership blogs > to > news, videos, case studies, tutorials and more. Take a

[Mauve-users] SNP / indel format to VCF conversion?

2016-07-14 Thread Joseph Fass
y own, but I wondered if anyone's dealt with this before. Thanks for any advice, leads, etc. ... ~Joe -- Joseph Fass Bioinformatics Data Analyst UC Davis Genome Center - Bioinformatics Core http://bioinformatics.ucdavis.edu/ jnf...@ucdavis.edu phone ~ 53

Re: [Mauve-users] Annotations and Contigs

2014-09-02 Thread Joseph Fass
s. > http://tv.slashdot.org/ > _______ > Mauve-users mailing list > Mauve-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/mauve-users > > -- Joseph Fass Lead Data Analyst UC Davis Genome Center - Bioinformatics Core http

[Mauve-users] BAM's in Mauve?

2014-01-09 Thread Joseph Fass
Is there any interest in adding read alignment browsing to mauve? I.e. load BAM files for each reference, and view all the read alignments at the same time, anchored and gapped according to the multiple alignment between genomes? If not, is anyone aware of a tool that does this? -Joe

Re: [Mauve-users] mauve contig mover from the command line

2013-10-11 Thread Joseph Fass
ng, and more. Get the most > from > the latest Intel processors and coprocessors. See abstracts and register > > http://pubads.g.doubleclick.net/gampad/clk?id=60134071&iu=/4140/ostg.clktrk > ___ > Mauve-users maili

Re: [Mauve-users] confident alignments?

2013-10-09 Thread Joseph Fass
bads.g.doubleclick.net/gampad/clk?id=60134071&iu=/4140/ostg.clktrk > ___ > Mauve-users mailing list > Mauve-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/mauve-users > --

[Mauve-users] percent identity between genomes

2012-06-07 Thread Joseph Fass
thought of using the positions in the SNPs file, but that excludes gaps between LCBs and other more complicated differences, right? Any help would be appreciated ... ~Joe -- Joseph Fass Lead Data Analyst UC Davis Bioinformatics Core http://bioinformatics.ucdavis.edu/ joseph.fass -at-

[Mauve-users] sequence "screenshot" tool?

2012-05-29 Thread Joseph Fass
ile of the currently-viewable sequence, with genome names and ranges (or chromosome names and ranges? or both?). I'd find this very useful for a current project, but I'm wondering if others would find it useful enough to clamor for an added feature! Thanks, ~Joe -- Joseph Fass Lead Da

Re: [Mauve-users] order of sequences

2011-11-29 Thread Joseph Fass
> RSA(R) Conference 2012 > Save $700 by Nov 18 > Register now > http://p.sf.net/sfu/rsa-sfdev2dev1 > ___ > Mauve-users mailing list > Mauve-users@lists.sourceforge.net > https://lists.sourceforge.net

Re: [Mauve-users] Using mauve to align scaffolds

2011-01-27 Thread Joseph Fass
auve-users mailing list > Mauve-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/mauve-users > -- Joseph Fass Bioinformatics Programmer UC Davis Bioinformatics Core joseph.fass -at- gmail.com (professional) 970.227.5928 (c) || 530.752.2698 (w) -