On Mon, Oct 25, 2010 at 8:16 PM, Igor Filippov [Contr]
wrote:
> Dear All,
>
> I'm not able to get a static compilation (-DBUILD_SHARED=no) on either
> OSX or Windows (MinGW). On OSX it fails at 81% "building babel.o", on
> MinGW at 23% "building mcdlutil.obj". If anyone was successful on either
>
Dear All,
I'm not able to get a static compilation (-DBUILD_SHARED=no) on either
OSX or Windows (MinGW). On OSX it fails at 81% "building babel.o", on
MinGW at 23% "building mcdlutil.obj". If anyone was successful on either
platform I would appreciate any pointers!
Regards,
Igor
On Mon, 2010-10
Good call, after installing eigen and eigen2 (not sure which one is
necessary) I got everything compiled and was able to run the tests.
84% tests passed, 9 tests failed out of 57
The following tests FAILED:
3 - builder_Test (Failed)
10 - isomorphism_Test (SEGFAULT)
11
On Oct 25, 2010, at 11:49 AM, Igor Filippov [Contr] wrote:
> The bigger problem is, even after I install static libxml2 the
> compilation step fails for me. I'm attaching make.out output of "make".
You don't have Eigen installed, do you?
-Geoff
-
Tim,
The "cmake" step now requires static libxml2 installed, otherwise it
fails - not a problem, just something people should be aware of. The
output when lixml2.a is absent is attached - cmake.out;
The bigger problem is, even after I install static libxml2 the
compilation step fails for me. I'm
Tim,
>
> With r4240, plugins are now included in an executable without any
> additional hacks. It's all done in C++ which means it is also easier
> to maintain for different compilers. This also means that the tests
> can now be executed for static builds. This helped me identify some
> missing p
On Thu, Oct 21, 2010 at 1:35 AM, Tim Vandermeersch
wrote:
> On Wed, Oct 20, 2010 at 4:29 PM, Igor Filippov [Contr]
> wrote:
>> Tim,
>>
>>> I'll take a look since it is an important format to support. This
>>> should be the last major issue for static building though.
>>>
>>
>> Great - thank you!
On Wed, Oct 20, 2010 at 4:29 PM, Igor Filippov [Contr]
wrote:
> Tim,
>
>> I'll take a look since it is an important format to support. This
>> should be the last major issue for static building though.
>>
>
> Great - thank you! Could the static_plugins.o be also compiled into
> libopenbabel.a by d
Tim,
> I'll take a look since it is an important format to support. This
> should be the last major issue for static building though.
>
Great - thank you! Could the static_plugins.o be also compiled into
libopenbabel.a by default? I think this would make sense...
Igor
On Tue, Oct 19, 2010 at 5:28 PM, Igor Filippov [Contr]
wrote:
>
>>
>> static_plugins.cpp only contains a few formats since including all
>> formats in a single cpp file can take a long time/memory to compile.
> True, but piece-meal inclusion with flags such as WITH_COMMON_FORMATS seems a
> very r
>
> static_plugins.cpp only contains a few formats since including all
> formats in a single cpp file can take a long time/memory to compile.
True, but piece-meal inclusion with flags such as WITH_COMMON_FORMATS seems a
very reasonable approach.
It would be great if a set of such flags covered t
On Mon, Oct 18, 2010 at 10:33 PM, Igor Filippov [Contr]
wrote:
> These are the formats recognized by statically linked OB:
>
> $ bin/babel -L formats
> can -- Canonical SMILES format
> copy -- Copy raw text [Write-only]
> ent -- Protein Data Bank format
> fix -- SMILES FIX format [Write-only]
> md
These are the formats recognized by statically linked OB:
$ bin/babel -L formats
can -- Canonical SMILES format
copy -- Copy raw text [Write-only]
ent -- Protein Data Bank format
fix -- SMILES FIX format [Write-only]
mdl -- MDL MOL format
ml2 -- Sybyl Mol2 format
mol -- MDL MOL format
mol2 -- Syby
On Mon, Oct 18, 2010 at 9:49 PM, Igor Filippov [Contr]
wrote:
> Tim,
>
> Something still not working for me -
>
> Here is what I do:
>
> g++ -fopenmp -g -O3 -g -O2 -I/usr/local/ -D_LIB -D_MT -Wall
> -I/usr/local//src/ -I/usr/local//src/ -I/usr/local//include/
> -I../openbabel-2.3.0rc1//include
Replying to my own message - I can happily report some progress:
I was able to get a functioning executable by linking with
libopenbabel.a AND static_plugins.o:
g++ -fopenmp -g -O3 -fPIC -o osra osra.o osra_anisotropic.o osra_ocr.o
osra_openbabel.o mcdlutil.o unpaper.o -L/usr/local//src/ -lpotra
Tim,
Something still not working for me -
Here is what I do:
g++ -fopenmp -g -O3 -g -O2 -I/usr/local/ -D_LIB -D_MT -Wall
-I/usr/local//src/ -I/usr/local//src/ -I/usr/local//include/
-I../openbabel-2.3.0rc1//include/
-I../openbabel-2.3.0rc1//build/include/ -I/usr/local/include/
-I/usr/inclu
Hi,
On Mon, Oct 18, 2010 at 8:28 PM, Igor Filippov [Contr]
wrote:
> Tim,
>
> Thanks, I can build my executable per your instructions and it runs
> without segfaults, but doesn't seem to get the format plugins yet - the
> output when I want to get SMILES for example is empty.
>
> I'm also looking
Tim,
Thanks, I can build my executable per your instructions and it runs
without segfaults, but doesn't seem to get the format plugins yet - the
output when I want to get SMILES for example is empty.
I'm also looking at the page "Plugins -> Creating custom static
libraries" at http://openbabel.or
On Fri, Oct 15, 2010 at 11:40 PM, Igor Filippov [Contr]
wrote:
> It builds nicely on Fedora 12, x64 system.
> Some points:
>
> 1) When building with -DBUILD_SHARED=no one needs to make sure static
> zlib exists somewhere (libz.a) otherwise the error message which cmake
> gives is somewhat confusin
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