and Lightning next. For all of those, I will
try the superbuild provided script first to see if it works. Hopefully it does.
Tim
- Original Message -
From: "Andy Bauer" <andy.ba...@kitware.com>
To: "tim gallagher" <tim.gallag...@gatech.edu>
Cc: "para
Thanks!
If you want to volunteer to rewrite our CMake files, I wouldn't fight you :)
I'll let you know when I get it working!
Tim
- Original Message -
From: "Andy Bauer" <andy.ba...@kitware.com>
To: "tim gallagher" <tim.gallag...@gatech.edu>
Cc: &
>
To: "Chuck Atkins" <chuck.atk...@kitware.com>
Cc: "tim gallagher" <tim.gallag...@gatech.edu>, "paraview"
<paraview@paraview.org>
Sent: Thursday, February 25, 2016 11:21:27 AM
Subject: Re: [Paraview] [Non-DoD Source] Building on Cray systems
Hi,
I have a simulation that is periodic in 2 of the 3 directions and I would like
to plot some streamlines coming from specific points in the domain. Some of
these points are close to one of the periodic edges.
Is there a way to tell Paraview that the domain is periodic and that streamline
Sorry if you get this multiple times -- the original was blocked from the PV
list because the output log was too big. I can send the log I referred to
off-list to anybody who is interested.
--
Good morning!
Thanks Andy and Richard for the
-
From: "Richard C Angelini (Rick) CIV USARMY RDECOM ARL (US)"
<richard.c.angelini@mail.mil>
To: "tim gallagher" <tim.gallag...@gatech.edu>, "paraview"
<paraview@paraview.org>
Sent: Thursday, February 4, 2016 8:54:08 AM
Subject: RE: [Non-DoD
t specific functionality - I can provide you the
build scripts we use on those systems.
-Original Message-
From: ParaView [mailto: paraview-boun...@paraview.org ] On Behalf Of Tim
Gallagher
Sent: Thursday, February 04, 2016 8:25 AM
To: paraview < paraview@paraview.org >
Subj
Hi everybody,
I'm about to endeavor on the always fun process of building Paraview on Cray
systems, specifically Copper (ERDC), Garnet (ERDC) and Excalibur (ARL). Little
is ever easy on these systems and I've never succeeded at building paraview on
them in the past. However, we want to run
I've also pulled data from a database using a ProgrammableSource and connecting
to the database with Python and then building the needed VTK structures from
there to pass through the pipeline. I don't know about the built-in ways to use
data from SQL, I just did it a brute-force way and got my
tu_writer_parameters and proxy=XdmfWriter were found.
Is it possible to write out a multiblock dataset from coprocessing using XDMF?
Thanks again,
Tim
- Original Message -
From: "Andy Bauer" <andy.ba...@kitware.com>
To: "tim gallagher" <tim.gallag...@gatech.e
Hi everybody,
I was working with a colleague to get his simulation running with coprocessing
and I am totally stumped on the problem. I have been able to set up and render
some very complex things with our code, but for some reason this simulation
just won't work as expected.
We generated
Andy,
I think I've made a mock up of what you are trying to do and may have gotten it
to run correctly, if I understood your problem accurately. I have a structure
like:
package/
driver/
driver.py
scripts/
filewithparaviewstuff.py
utilities.py
The contents of each file are really
0 you will get the minimum
for each cell, 1 is the average, etc.. The 5th field (component 4) is used
internally and doesn't matter.
Hope that helps,
Tim
- Original Message -
From: "Thomas Fastl" <thomas.fa...@kcl.ac.uk>
To: "tim gallagher" <tim.gallag...@gat
Thomas,
You can use the MeshQuality filter to compute the Edge Ratio for tetrahedral
cells. This will give you a field called Quality in your dataset. You can then
compute the statistics on it using other filters as needed.
That should do what you are looking for. The definitions used in the
- Original Message -
From: "Tim De Coster" <tim91decos...@gmail.com>
To: "tim gallagher" <tim.gallag...@gatech.edu>
Cc: paraview@paraview.org
Sent: Tuesday, January 19, 2016 4:33:49 PM
Subject: Re: [Paraview] Memory overload and I don't know what to delete
Your delete line is
Delete(Animationscene1)
but your variable is actually called AnimationScene1 (camel-case lettering).
Python is case-sensitive, so that's why you are getting the error you are
showing.
That said, we do two things to loop over everything. We can Delete() every
object,
Apply a CellDataToPointData filter after you load your dataset and before you
try to use the contour or stream line filters. They both require node-based
data but you are providing cell-centered data.
Tim
- Original Message -
From: "wide li"
To:
is S_xz, Strain_3 is S_yx...
through to Strain_8 = S_zz.
With all of those individual components, your Calculator filter for Lambda_2
will just be a bunch of products and sums of those terms.
Tim
- Original Message -
From: "David Larsson" <david.lars...@sth.kth.se
David,
I haven't taken on lambda-2 yet, but I have been able to build a pipeline for
Q-Criterion. It looks something like:
Data -> CellDataToPointData (if it isn't already point data) ->
ComputeDerivatives (set the gradient option to vorticity and the tensor option
to strain) ->
For the sake of people years later who come across this thread, there is a typo
in my definition and it should be:
lambda_2 = S_ik S_kj + \Omega_ik \Omega_kj
Tim
- Original Message -
From: "Tim Gallagher" <tim.gallag...@gatech.edu>
To: "David Larsson"
Hi Alexandre,
I don't know if this is possible or not with Catalyst, hopefully somebody else
comes along to answer that.
But, we did this in our code using signal handling and POSIX signals (see
http://man7.org/linux/man-pages/man7/signal.7.html). We define 3 behaviors in
our code -- reload
;utkarsh.ayac...@kitware.com>
To: "Tim Gallagher" <tim.gallag...@gatech.edu>
Cc: "ParaView list" <paraview@paraview.org>
Sent: Monday, November 23, 2015 10:32:24 AM
Subject: Re: [Paraview] Creating a surface along a complex path
Is this what you're looking for: ht
Hi,
I had an idea I would like to explore but I'm not sure the right way to do it.
I have a 3D vtkMultiblockDataset that is composed of curvilinear structured
blocks. Let's say I create a line source with s = f(x,y,z). This line source
can have a normal vector at each point that is confined to
ason for this
is that a slice through a multiblock data set outputs a multiblock of polydata.
You can use the Merge Blocks filter to reduce it to an unstructured grid.
Cheers,
Andy
On Mon, Oct 26, 2015 at 8:21 PM, Tim Gallagher < tim.gallag...@gatech.edu >
wrote:
Hi,
I'm struggling
Hi,
I'm struggling to write a script for Paraview that will let me take a slice
through my vtkMultiblockDataSet and save just the slice (so all of the data on
the slice and all of the points that make up the slice) in a format that I can
look at later. I can get it to dump all of the data to a
Hi all,
I am working on visualization of topological features and I have hit a VTK
wall. I have a 2D structured grid that has been built into a
vtkMutableDirectedGraph with the vertices as the nodes and the connections
between vertices as the edges (not all vertices will end up connected
my own questions at the end, the graph nodes need to be stored on
the tree by doing:
bfs_tree.CreateGraphVertexIdArrayOn()
...
graph_ids = tree.GetVertexData().GetArray("GraphVertexId")
Tim
- Original Message -----
From: "Tim Gallagher" <tim.gallag...@ga
quot;Andy Bauer" <andy.ba...@kitware.com>
To: "tim gallagher" <tim.gallag...@gatech.edu>
Cc: "ParaView list" <paraview@paraview.org>
Sent: Tuesday, October 6, 2015 10:19:01 AM
Subject: Re: [Paraview] Finding center points/lines of a scalar field
Hi
H5T_IEEE_F64LE
DATASPACE SIMPLE { ( 6, 85, 85 ) / ( 6, 85, 85 ) }
}
}
- Original Message -
From: Canis Major canismajorw...@gmail.com
To: tim gallagher tim.gallag...@gatech.edu
Sent: Friday, March 6, 2015 6:05:43 PM
Subject: Re: [Paraview] Import of XDMF/HDF5:Cell centered attribute
Hi guys,
So the problems you're having are due to specifying inconsistent data here. You
are specifying a 2DRectMesh grid but then giving it 3 vectors for the points. I
don't have your HDF5 files so I made a light data XMF file that works for me on
all versions going back to 3.14. I have
Hi Rich,
There may be a few who are willing to help out if you can provide some specific
questions or issues you run into.
Have you looked through the documentation at http://www.paraview.org/in-situ/ ?
I got Catalyst up and running in our code (not on a BG/Q but on different
clusters) with
Hi Simon,
I've gone through the process myself and it actually was not that painful, but
how long it takes will depend on how familiar you are with VTK already. It's
almost trivial if your code's data structures already use VTK. If they don't,
then it's a matter of translating your data into
Hi all,
I am working on a programmable filter and I want to extract and analyze data
generated by an isosurface. I'm having a hard time coming up with generic data
to represent what I mean, but I'll try to describe it.
I run my data and generate an isosurface for a single value. The resulting
Are you building it yourself or using a pre-packaged binary?
If building yourself, set the PARAVIEW_INSTALL_DEVELOPMENT_FILES option in
CMake to ON.
Tim
- Original Message -
From: Daniel WEI lak...@gmail.com
To: paraview@paraview.org
Sent: Friday, January 25, 2013 2:14:56 PM
If you look on the Xdmf Model and Format website
(http://www.xdmf.org/index.php/XDMF_Model_and_Format) you can see that there is
a 2DCoRectMesh and 3DCoRectMesh topology which can be used to make 2/3D
constant spacing meshes with axis aligned to X,Y,Z.
And example of how to write this is on
Hi,
We have a dataset that ranges from 0 to 7 and represents categorical data. Is
it possible through a python script to explicitly set the tick labels on a
scalar bar so I can manually map them to strings? For instance:
{0.0 - None, 1.0 - I, 2.0 - J,...}
Thanks,
Tim
andy.ba...@kitware.com
To: tim gallagher tim.gallag...@gatech.edu
Cc: ParaView list paraview@paraview.org
Sent: Friday, November 9, 2012 4:21:48 PM
Subject: Re: [Paraview] CoProcessing needed fields
I can't tell for sure but what are you using as inputName in
ParaViewCoProcessor.cxx? It should
this little
project attempt. I can certainly send my adaptor code and python script if it
helps clarify.
Thanks again,
Tim
- Original Message -
From: Andy Bauer andy.ba...@kitware.com
To: tim gallagher tim.gallag...@gatech.edu
Cc: ParaView list paraview@paraview.org
Sent: Thursday
are in the wrapper C++ code.
I may be doing something horribly wrong... But it works when I modified the
script as you see in cpScript.py.
Thanks,
Tim
- Original Message -
From: Andy Bauer andy.ba...@kitware.com
To: tim gallagher tim.gallag...@gatech.edu
Cc: ParaView list paraview@paraview.org
the
Module_vtkFiltersExtraction was OFF and INTERNAL until I changed it.
Tim
- Original Message -
From: Tim Gallagher tim.gallag...@gatech.edu
To: Utkarsh Ayachit utkarsh.ayac...@kitware.com
Cc: ParaView list paraview@paraview.org
Sent: Saturday, November 3, 2012 8:15:27 PM
Subject: Re: [Paraview] Problem
file lib/paraview-3.14/libvtkFiltersParallel-pv3.14.so.1 matches
So I don't know why I don't have access to it from pvpython.
Any ideas what went wrong?
Tim
- Original Message -
From: Utkarsh Ayachit utkarsh.ayac...@kitware.com
To: Tim Gallagher tim.gallag...@gatech.edu
Cc
Okay, thanks. I was following the directions at:
http://paraview.org/Wiki/CoProcessing
which do not mention anything about turning off QT-related things.
Thanks,
Tim
- Original Message -
From: Utkarsh Ayachit utkarsh.ayac...@kitware.com
To: Tim Gallagher tim.gallag
Hi,
I'm trying to build the code I just pulled on master:
git branch
* master
git describe
v3.14.1-2499-g16f07c1
I set VTK_USE_X to OFF:
grep USE_X CMakeCache.txt
VTK_USE_X:BOOL=OFF
but it fails while building with:
Linking CXX shared library ../../../lib/libvtkGUISupportQt-pv3.14.so
If you don't care what it says, you can do:
paraview 2 /dev/null
which will pipe all output to the void.
Tim
- Original Message -
From: Timothy Cale drtsc.p...@gmail.com
To: paraview@paraview.org
Sent: Friday, September 7, 2012 3:01:55 PM
Subject: [Paraview] Can I stop the
We've never had any luck getting time series with XDMF to work correctly in
Paraview.
However, we create animations all the time. Using the python trace feature, we
set up the image using one of the files from the dataset. Then we modify the
generated trace file slightly (make it so it's a
Hi,
We had a programmable filter that started out like:
from paraview import vtk
input = self.GetInputDataObject(0, 0)
output = self.GetOutputDataObject(0)
ngls = 2
if input.IsA(vtkMultiBlockDataSet):
nblk = input.GetNumberOfBlocks()
print nblk = , nblk
for n in range(nblk):
) Grid.
Why is the data type returned different now from the
vtkMultiBlockDataSet.GetBlock() call?
Tim
- Original Message -
From: Tim Gallagher tim.gallag...@gatech.edu
To: ParaView list paraview@paraview.org
Sent: Monday, February 27, 2012 2:09:37 PM
Subject: [Paraview] Python
Hi,
We're trying to compare two datasets using the Python calculator and the
instructions on:
http://paraview.org/Wiki/index.php?title=ParaView/Users_Guide/Python_Calculator#Comparing_Multiple_Datasets
However, when we choose our datasets and apply the filter, it says it doesn't
support
I don't really have a horse in the race here, but I've fought a lot with CMake
and the old school Makefile/configure setup and CMake is infinitely better. To
address your rant:
0. We've used it on every HPC system the DOD, DOE and NASA have to offer with
no problems. Cray, IBM, SGI, our own
The best way to learn what variables/functions to use is to turn on the Python
Trace feature in the GUI, change what you want to change, then see what the
trace says.
In this instance, pull up something to look at, turn on the trace, zoom in,
then turn off the trace and it will show you how
Subject: Re: [Paraview] Scaling up 3-D area in screenshots
On 2011-09-22 15:48, Tim Gallagher wrote:
The best way to learn what variables/functions to use is to turn on the
Python Trace feature in the GUI, change what you want to change, then see
what the trace says.
In this instance, pull
release.
Utkarsh
On Wed, Aug 24, 2011 at 11:56 PM, Tim Gallagher
tim.gallag...@gatech.edu wrote:
Hi all,
So I did some more digging. It turns out the instructions on the wiki at:
http://www.vtk.org/Wiki/ParaView/Python_Scripting#Loading_State_and_Manipulating_It
is wrong. If you follow
I can make the change to the page
(assuming as a new user I can... if not, can somebody update the information?)
Tim
- Original Message -
From: Tim Gallagher tim.gallag...@gatech.edu
To: ParaView list paraview@paraview.org
Sent: Wednesday, August 17, 2011 11:48:54 PM
Subject: Re
I know for our HPC access, they require a custom version of SSH that has been
security enhanced. So if PV used a built-in libssh, we would be unable to use
PV to connect through to them.
I don't have a better solution, just wanted to point out that packaging libssh
without an option to use a
We actually just tried to do the same thing for the first time yesterday and
had the same issues... so if anybody has an answer, we'd like it too!
Is it just a matter of accessing some kind of data pulled in from the state
file and doing a Show() or something? I got the data to appear that way
Or, you can do it in one step (and alias it back to git submodule update, if
you would really like to):
git submodule update --init
This will update all modules and init any that are new.
Tim
- Original Message -
From: David E DeMarle dave.dema...@kitware.com
To: David Doria
().SetExtentTranslator(self.GetExecutive().GetOutputInformation(0),
vtk.vtkExtentTranslator())
David E DeMarle
Kitware, Inc.
RD Engineer
28 Corporate Drive
Clifton Park, NY 12065-8662
Phone: 518-371-3971 x109
On Wed, Aug 3, 2011 at 11:09 AM, Tim Gallagher tim.gallag...@gatech.edu wrote:
I guess I sort
Hi,
I know many of the built-in readers/filters already work in parallel, but how
does one write a parallel programmable filter?
Our data files are XDMF and split into blocks of data. We have a single XDMF
file that we can read that reads all the blocks and generates a
vtkMultiBlockDataset
, not NCPU MB{}'s.
Hopefully that makes sense... I've never used PV in parallel, so I'm not sure
how it all works.
Tim
- Original Message -
From: Tim Gallagher tim.gallag...@gatech.edu
To: ParaView list paraview@paraview.org
Sent: Wednesday, August 3, 2011 9:24:25 AM
Subject: [Paraview
, Tim Gallagher tim.gallag...@gatech.edu
wrote:
Hi,
I just built off the master branch (commit 4f0d9672) and I noticed
XDMF_WRAP_PYTHON was no longer an option.
It appears it was set to INTERNAL in commit 7ac1f751, which was due to the
conversation in the mailing list (
http
Hi,
I just built off the master branch (commit 4f0d9672) and I noticed
XDMF_WRAP_PYTHON was no longer an option.
It appears it was set to INTERNAL in commit 7ac1f751, which was due to the
conversation in the mailing list
(http://markmail.org/message/gapnf4reuazdtfcn), although I'm not sure
The only way I can think is to set the image size and the camera location
correctly so you don't have excess space around your data.
Image size is set by:
RenderView1 = GetRenderView()
RenderView1.ViewSize = [1160, 760]
And the camera location can be changed by:
RenderView1.CameraPosition =
and the output will be the same type of field data. I'm about to
change this filter so that it will work with all types of VTK grids.
Andy
On Thu, Jun 2, 2011 at 12:29 PM, Tim Gallagher tim.gallag...@gatech.edu
wrote:
blockquote
The output from the ComputeDerivatives is Cell Data. To do
1. If it's cell centered data, apply the CellDataToPointData filter. If it's
point data, skip this step
2. Apply the ComputeDerivatives filter. Choose your velocity vector as the
Vectors argument, set the Output Vector Type to Vorticity. I usually also set
Output Tensor Type to nothing unless
It's quite easy to do in the XMF file:
Attribute AttributeType=Scalar Center=Cell Name=H2O_mass_fraction
DataItem NumberType=Float Dimensions=36 36 28 Precision=8
Format=HDFoutputpath;/RESTS/REST_N_R00/REST_N_0/REST_N_0.h5:/FlowData/H2O_mass_fraction/DataItem
/Attribute
for example.
Hi,
I'm working on an AMR problem and I'm trying to store the grid with Xdmf. In
the CGNS file format, there was an OversetHoles node type that defined a list
of cells in one grid that should be turned off because another set of cells
has that information.
I was thinking that the SubSet grid
Hi,
We're trying to use the 64bit binary of 3.10 to load an XDMF file, but it
segfaults as soon as we click on open.
Also, I requested this before and somebody replied and said it was done, but
the 3.10 release doesn't have it -- Can it be built with XDMF_WRAP_PYTHON
turned on? That's the
Bummer about XDMF_WRAP_PYTHON, but not a huge deal.
The bigger problem is the seg fault when loading XDMF datasets. I'd be happy to
give data to replicate the problem if nobody else is seeing the issue.
Tim
- Original Message -
From: Sven Buijssen sven.buijs...@tu-dortmund.de
To: Tim
It sounds like you want to use Paraview in situ, no?
Something like this:
http://www.vtk.org/Wiki/CoProcessing
Tim
- Original Message -
From: Alexander Siemers alexander.siem...@skf.com
To: paraview@paraview.org
Sent: Friday, February 25, 2011 4:01:28 AM
Subject: [Paraview]
Without looking at the script in detail, have you tried using the Python Trace
feature in the GUI? Since, at this stage anyway, all of your tasks are straight
forward, you can do them in the GUI with the trace turned on, then look at the
resulting script to show you how all of it is done.
builds
We can probably do this for the final binaries. I was aware that this was off
by default.
On Fri, Feb 18, 2011 at 9:02 AM, Tim Gallagher tim.gallag...@gatech.edu
wrote:
Hi,
It's probably too late for the binaries already online, and there may be a good
reason why it isn't done
You can use the Python Calculator, which will let you use any valid Python
expression -- such as math.atan2().
Tim
- Original Message -
From: Nico Schlömer nico.schloe...@gmail.com
To: Andy Bauer andy.ba...@kitware.com
Cc: paraview@paraview.org
Sent: Wednesday, February 16, 2011 8:29:02
into a data array.
I can't remember the name of it though, perhaps somebody else can help you
there if you can't find it online.
Tim
- Original Message -
From: Nico Schlömer nico.schloe...@gmail.com
To: Andy Bauer andy.ba...@kitware.com
Cc: gtg0...@mail.gatech.edu, tim gallagher tim.gallag
Hi,
I've searched online at length for this and couldn't find the answer, so
hopefully somebody here can help me.
I am trying to create a new VTK object (vtkMultiBlockDataSet) composed of
portions of manipulated data from some other VTK object (in this case, a
vtkStructuredGrid). I then want
/Python_Programmable_Filter#Generating_Data_.28Programmable_Source.29
http://www.paraview.org/Wiki/Here_are_some_more_examples_of_simple_ParaView_3_python_filters
.
Pat
On Wed, Feb 9, 2011 at 4:20 PM, Tim Gallagher tim.gallag...@gatech.edu
wrote:
Hi,
I've searched online at length
Maybe I'm missing something, but if I
from paraview import vtk
there is no vtkXDMFReader in it. The only vtkX* is vtkXML related. It was even
compiled with XDMF_WRAP_PYTHON turned on, so maybe it's there but called
something else?
Tim
- Original Message -
From: Tim Gallagher
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