Dear HCLSIG users,
We have received a number of questions/comments from you for our
BioPortal sneak preview. Please continue to provide comments/suggestions
as this will help us to ensure BioPortal meets the community needs. We
have collected the following recent feedback from several different
On Tue, 9 Jan 2007, Alessio Carenini wrote:
Hello all,
I'm developing a semantic interoperability system, trying to aggregate
data coming from various HL7 v.3 documents in order to build instances
of other HL7 v.3 documents. I've done a rough mapping of the HL7 v.3 MIF
files into OWL ontologies
As may have been mentioned, we are going to try to start working on ways to use
some of the BIRN tools to add a visualization & atlasing component to the
upcoming demo. The intent is to start looking at how to do this with the AD Use
Case, but as June pointed out in the BioRDF call yesterday
That's excellent.
As may have been mentioned, we are going to try to start working on
ways to use some of the BIRN tools to add a visualization & atlasing
component to the upcoming demo. The intent is to start looking at
how to do this with the AD Use Case, but as June pointed out in the
I'd really hoped to follow up on the discussions surrounding both the Use Cases
and ontology sections of the HCLSIG manuscript that just went out.
[VK] As you can see in the action items, Don, June and Helen have decided to
work together to integrate the AD and PD use cases and introduce
Thanks for the minutes, Vipul.
Sorry for not being present today. I had a conflict.
I'd really hoped to follow up on the discussions surrounding both the
Use Cases and ontology sections of the HCLSIG manuscript that just
went out.
Cheers,
Bill
On Jan 9, 2007, at 1:35 PM, Kashyap, Vipul w
Kerstin,
Chimezie has agreed to present the ontology in one of the forthcoming Telcons.
Will share with the group as soon as the dates are finalized.
---Vipul
> -Original Message-
> From: [EMAIL PROTECTED] [mailto:public-semweb-lifesci-
> [EMAIL PROTECTED] On Behalf Of Forsberg, Kersti
Hi Eric,
Yes, our plan will be to provide URIs for referencing all content. We
hope to have that available soon.
In addition, we are also working on exposing as Web services the
functions available through the BioPortal GUI.
Let us know if you have any other questions or feedback on requirements
Hi Trish,
You can contact me regarding questions about this.
BioPortal provides an ontology library containing the different
release versions of ontologies, as submitted to us by the content
owners, but is not a content management system such as cvs. Different
ontology developers will use the
Dear Friends,
Helen Parkinson and Robert Stevens are chairing the Ontologies and
Databases area at ISMB this year. We would like a really good set of
papers to review and select a very strong session. We therefore
encourage you to submit papers. we know there is a lot of interesting
work discus
Chimezie,
the clinical recording ontology you describe in the documentation
on the Wiki do look very interesting:
http://lists.w3.org/Archives/Public/public-semweb-lifesci/2006Dec/0002.html
May I suggest that you walk us through the core of it, and your key
learnings from developing it, in a sui
I strongly agree with the several endorsements to make use of the
BioPortal for this requirement.
In working directly with NCBO on the ontology component of what we're
doing, we will also be much more likely be aware of - and make use of
- the other relevant ontologies being aggregated with
are available at: http://www.w3.org/2007/01/09-hcls-irc
---Vipul
===
Vipul Kashyap, Ph.D.
Senior Medical Informatician
Clinical Informatics R&D, Partners HealthCare System
Phone: (781)416-9254
Cell: (617)943-7120
http://www.partners.org/cird/AboutUs
Hi Mark,
Are you the person to request updates of information currently displayed
on the site?
Also, can you provide more details on how the BioPortal will provide
versioning? Last I understood, there were no SVN capabilities with the
BioPortal - has that changed or did I misunderstand the
Mark,
I do think this is the right way to share and interlink ontologies.
We would certainly support the cross-linking from our activity sites,
as well as using them directly.
Looking at the interface, it is not clear to me ho best to reference
an element of the ontologies there-- is the
:-) I have talked to Marisol to set things right...
I.
Kashyap, Vipul wrote:
> The teleconference line is fine….
>
>
>
> ---Vipul
>
> THE INFORMATION TRANSMITTED IN THIS ELECTRONIC COMMUNICATION IS INTENDED
> ONLY FOR THE PERSON OR ENTITY TO WHOM IT IS ADDRESSED AND MAY CONTAIN
> CONFIDENTIA
The teleconference line is fine
---Vipul
THE INFORMATION TRANSMITTED IN THIS ELECTRONIC COMMUNICATION IS INTENDED ONLY
FOR THE PERSON OR ENTITY TO WHOM IT IS ADDRESSED AND MAY CONTAIN CONFIDENTIAL
AND/OR PRIVILEGED MATERIAL. ANY REVIEW, RETRANSMISSION, DISSEMINATION OR OTHER
USE OF
Let me emphasize that this is a pre-release version on the Web site.
There will be lots of changes between now and February 1.
The system handles versioning very well, and you will be able to go
back and review older versions in addition to the most current
posting. There is planned suppo
Hi,
We are facing the same problems as BIORDF yesterday...
---Vipul
===
Vipul Kashyap, Ph.D.
Senior Medical Informatician
Clinical Informatics R&D, Partners HealthCare System
Phone: (781)416-9254
Cell: (617)943-7120
http://www.partners.org/cird/
Hi, Mark
Thanks so much for your suggestion.
Like Alan, I also registered as a user and had a very quick look at the
portal. I agree with Alan's observation and his concern on the copy right
and the site's support for its availability and svn services.
I tried to submit a new ontology just
On Jan 9, 2007, at 6:43 AM, Alan Ruttenberg wrote:
1) The terms of service says: "Except as expressly prohibited on
the Site, you are permitted to view, copy, print and distribute
publications and documents within this Site, subject to your
agreement that:... You will display the below copy
Helen,
As many of you know, NLM is developing a large repository of biomedical
knowledge, extracted from the biomedical literature, terminological and
knowledge bases, and contributed by outside collaborators. (The research
presented by Satya Sahoo at the HCLS workshop at ISWC [and to the Bio
I've taken a quick look at the BioPortal and have some initial comments:
1) The terms of service says: "Except as expressly prohibited on the
Site, you are permitted to view, copy, print and distribute
publications and documents within this Site, subject to your
agreement that:... You will
Hello all,
I'm developing a semantic interoperability system, trying to aggregate
data coming from various HL7 v.3 documents in order to build instances
of other HL7 v.3 documents. I've done a rough mapping of the HL7 v.3 MIF
files into OWL ontologies and I'm finishing the algorithm to convert XM
+1
On TuesdayJan 9, 2007, at 9:09 AM, Kashyap, Vipul wrote:
I'd like to put in a vote that we take Mark up on his offer to have
the files hosted on the BioPortal. I think this is consistent with
the portion of the charter that says "HCLS will actively coordinate
with groups and consortia wi
> I'd like to put in a vote that we take Mark up on his offer to have
> the files hosted on the BioPortal. I think this is consistent with
> the portion of the charter that says "HCLS will actively coordinate
> with groups and consortia within Life Sciences and Health Care
> areas: ... Research I
I'd like to put in a vote that we take Mark up on his offer to have
the files hosted on the BioPortal. I think this is consistent with
the portion of the charter that says "HCLS will actively coordinate
with groups and consortia within Life Sciences and Health Care
areas: ... Research Ins
[cc-ing Ralph]
Eric Prud'hommeaux wrote:
Eric Prud'hommeaux wrote:
> * [EMAIL PROTECTED] <[EMAIL PROTECTED]> [2007-01-08 12:35-0500]
>
>>Eric
>>
>>Welcome!
>>
>>The task forces at HCLS are working on various use cases, converting
>>datasets, generating RDF, OWL, N3 files. Currently, some of the
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