Re: Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges

2008-08-20 Thread Kei Cheung
Peter Ansell wrote: - "Marco Roos" <[EMAIL PROTECTED]> wrote: From: "Marco Roos" <[EMAIL PROTECTED]> To: "Matthias Samwald" <[EMAIL PROTECTED]> Cc: "public-semweb-lifesci" , [EMAIL PROTECTED], [EMAIL PROTECTED] Sent: Wednesday, 20 August, 2008 8:11:36 PM GMT +10:00 Brisbane Subject: Re

Re: Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges

2008-08-20 Thread Kei Cheung
Hi Adrian et al, Thanks for the information. I just wonder how clinical workflow might be different from or the same as biological workflow. Also, I just noticed Licoln Stein was copied in this email. Below is my early response to Duncan's email: "It looks like there are a number of ways f

Re: Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges

2008-08-20 Thread Peter Ansell
- "Marco Roos" <[EMAIL PROTECTED]> wrote: > From: "Marco Roos" <[EMAIL PROTECTED]> > To: "Matthias Samwald" <[EMAIL PROTECTED]> > Cc: "public-semweb-lifesci" , [EMAIL PROTECTED], > [EMAIL PROTECTED] > Sent: Wednesday, 20 August, 2008 8:11:36 PM GMT +10:00 Brisbane > Subject: Re: Towards a cy

Re: Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges

2008-08-20 Thread Marco Roos
Hi Matthias, Interesting remarks. You'll be interested to know that 'webifying' workflows (in various ways) is one of the prime interests of people at myGrid and myExperiment. My personal opinion, a bit from a biologist's perspective, is that we should be careful not to loose some aspects of

Re: [Myexperiment-discuss] Re: Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges

2008-08-20 Thread Mark Wilkinson
I think the INB in spain have a web-based editor (at least for Moby services). It's called MOWServ: http://www.connotea.org/tag/MOWserv M On Wed, 20 Aug 2008 04:44:46 -0700, David De Roure <[EMAIL PROTECTED]> wrote: We'd be really pleased to work with anyone interested in developin

Re: Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges

2008-08-20 Thread Kei Cheung
Duncan Hull wrote: Hello Kei Glad you liked the article. On 20 Aug 2008, at 14:27, Kei Cheung wrote: "To my knowledge, there is currently only one project that aims to bring the pure semantic web to biomedical research. That project is the Simple Semantic Web Architecture and Protocol (

Re: Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges

2008-08-20 Thread Matthias Samwald
Peter Ansell wrote: I hadn't looked at DERI pipes for a while, but it has improved a lot since last time. It would be nice to get to the stage where the control flow can be supported in the same way as Yahoo Pipes. I wonder if Yahoo Pipes will eventually support SPARQL and RDF in the same way

Re: Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges

2008-08-20 Thread Adrian Walker
Hi All -- Here's another possible item for a cyberinfrastructure. It's a kind of Wiki for content, written as syllogism-flavored rules, in *executable* English. It's live on the Web, and shared use is free. It also works as an SOA endpoint on the Web. Here are some examples of a biological an

Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges

2008-08-20 Thread Duncan Hull
Hello Kei Glad you liked the article. On 20 Aug 2008, at 14:27, Kei Cheung wrote: "To my knowledge, there is currently only one project that aims to bring the pure semantic web to biomedical research. That project is the Simple Semantic Web Architecture and Protocol (SSWAP30)" It's ni

Re: Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges

2008-08-20 Thread Kei Cheung
Matthias Samwald wrote: Kei Cheung wrote: Also, it's interesting to see scientific workflows can be published via Wiki (e.g., myExperiment). But as far as I know, myExperiment does not allow editing the actual workflows online, you can only upload and visualize workflow files that have

RE: [Myexperiment-discuss] Re: Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges

2008-08-20 Thread David De Roure
Hi Matthias Just a quick response as director of myExperiment. What you describe - which I see as even more collaborative editing/authoring of workflows - is very interesting and could certainly fit well with myExperiment. We'd be really pleased to work with anyone interested in developing thi

Re: Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges

2008-08-20 Thread Peter Ansell
- "Matthias Samwald" <[EMAIL PROTECTED]> wrote: > From: "Matthias Samwald" <[EMAIL PROTECTED]> > To: "public-semweb-lifesci" > Sent: Wednesday, 20 August, 2008 6:53:09 PM GMT +10:00 Brisbane > Subject: Re: Towards a cyberinfrastructure for the biological sciences: > progress, visions and

Re: Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges

2008-08-20 Thread Matthias Samwald
Kei Cheung wrote: Also, it's interesting to see scientific workflows can be published via Wiki (e.g., myExperiment). But as far as I know, myExperiment does not allow editing the actual workflows online, you can only upload and visualize workflow files that have been created on the client-si