ATTENTION: NEW START TIME: Life Science SIG @ ISWC2009 8:30AM Monday October 26

*Life Science SIG * *NEW START TIME!!! ** 8:30AM-12pm October 26, 2009* *Washingtonian III Room, * *Westfields Conference Center *

REMINDER: Life Science SIG @ ISWC2009 Monday October 26

Life Science SIG <http://eneumann.org/meetings/LS-SIG-ISWC09.pdf> Co-located with ISWC 2009 8AM-12pm October 26, 2009 (http://iswc2009.semanticweb.org/wiki/index.php/ISWC_2009_Collocated_Events) Washingtonian III roomWestfields Conference Center near Washington, DC. Organizers:

Announcement: Life Science SIG at ISWC

Life Science SIG Co-located with ISWC 2009 8AM-12pm October 26, 2009 Washingtonian III room Westfields Conference Center near Washington, DC. Organizers: Eric Neumann (ClnicalSemanticsGroup), Ted Slater (Boehringer-Ingelheim) *Objective* A special interest group is being

Re: Is any HCLS meetup at ISWC ?

Hi Andrea, A life science SIG is planned (co-located with ISWC) for the morning of the 26th organized by me and Ted Slater (Boerhringer Ingelheim). I'll send out the flyer soon. Eric On Friday, September 25, 2009, Andrea Splendiani wrote: > I was wondering who was attending and if something was

SW - Linked Data BOF

Folks, The Sematic Web - Linked Data Birds of a Feather meetup is scheduled for July 1 at 1:15pm-- room to be posted shortly. Cheers, Eric

Re: Any meeting at ISMB ?

tered > for a SIG meeting (and will already fly back in the afternoon of June 30).   > Cheers, Matthias     From: eric neumann Sent: Thursday, June 18, 2009 5:04 > PM To: Andrea Splendiani Cc: w3c semweb HCLS Subject: Re: Any meeting at > ISMB ? > Andrea, > A SW BOF is pla

Re: Any meeting at ISMB ?

Andrea, A SW BOF is planned, and most likely will be either June 30 or July 1. I'll send an email shortly Eric On Thu, Jun 18, 2009 at 6:43 AM, Andrea Splendiani < andrea.splendi...@bbsrc.ac.uk> wrote: > Hi, > > I was wondering is somebody on this list was planning to held some > formal/informa

Slides on access control with SPARQL

Eric, The slides you and Fatih presented at the Cambridge Gathering are were quite interesting and relevant for many of us ( http://www.w3.org/2009/Talks/0504-swobjects-ep/acls). Could you add some additional explanations for slides #10-17, since it's not easy to glean the logical connections/depe

Re: blog: semantic dissonance in uniprot

+1 On Thu, Mar 26, 2009 at 12:31 PM, John F. Madden wrote: > Pat et al., > > It sounds like people sometimes have an irresistible itch to say that "A is > similar to B", but this statement as such has very little semantic content. > > Perhaps it's not really intended as a statement that has a tru

Re: Less strong equivalences (was Re: blog: semantic dissonance in uniprot)

Pat, Basically I'm in agreement with all of your points, but need to correct some mis-interpretations you made of my comments... On Thu, Mar 26, 2009 at 3:13 AM, Pat Hayes wrote: > > On Mar 25, 2009, at 5:27 PM, eric neumann wrote: > > Several different issues here. > > &

Re: blog: semantic dissonance in uniprot

Michel's point resonate with my experiences also, though I hesitate trying to push the definition of 'ProteinAggregate' to the rest of the bio world... but it's in the right spirit. : ) -Eric On Thu, Mar 26, 2009 at 9:28 AM, Michel_Dumontier < michel_dumont...@carleton.ca> wrote: > Pursuant to my

Re: Less strong equivalences

Phil, Wouldn't the structure of a molecule (seq for gene, bond connections for chemical) be considered an instance in its own right? Consequently to your point about 'classes', the class of d-glucose molecules are really all referring to the same Chem-Structure instance. Chemists will almost alway

Re: Less strong equivalences (was Re: blog: semantic dissonance in uniprot)

On Wed, Mar 25, 2009 at 5:47 PM, Bijan Parsia wrote: > Eric, > > Thanks for the use case! > > On 25 Mar 2009, at 21:31, eric neumann wrote: > > > > This is the kind of "similar" used in most internal genomic/compound >> systems... >> >>

Re: Less strong equivalences (was Re: blog: semantic dissonance in uniprot)

Bijan, >From your descriptions, I can't tell which one would best handle the following situation: "Object 1 refers to exactly the same molecule (exemplar) as object 2 refers to" This is the kind of "similar" used in most internal genomic/compound systems... :

Re: blog: semantic dissonance in uniprot

cheers, Eric On Tue, Mar 24, 2009 at 10:21 AM, Bijan Parsia wrote: > On 24 Mar 2009, at 13:49, eric neumann wrote: > > I think this discussion has been quite useful and important, since there >> are some remaining issues to be clarified by this community. I think all >

Re: blog: semantic dissonance in uniprot

I think this discussion has been quite useful and important, since there are some remaining issues to be clarified by this community. I think all points raised are good, but not equally valid. Bijan and Phil's thoughts are very useful for me, and would probably resonate within the informatics group

Re: blog: semantic dissonance in uniprot

Scott, Funny, I was just about to send a message on a very similar issue; may be it's what you're referring to, but let me know either way... After talking with many folks in industry over the last several months, it is becoming quite clear that when dealing with a molecular reference, such as uni

Re: Pharma Ontology Telcon

Susie, Apologies for not being able to participate-- another concurrent meeting... Please remind folks about the planned discussion for the Pharma Ontology at CSHALS next week. Eric On Tue, Feb 17, 2009 at 6:24 PM, Susie M Stephens < stephens_susi...@lilly.com> wrote: > > Here's the reminder for

Re: Pharma Ontology

Susie, Just tried to join today's call but Zakim seems to not let any new people on... will try again, but want to mention the interest some of us on the Pfizer ontology project to participate possibly here as well. Specifically, we should look at what is currently being done that can be used by a

Re: Vispedia: Interactive Visual Exploration of Wikipedia Data via Search-Based Integration

CTED] > >Sent: Monday, November 10, 2008 1:21 PM > >To: eric neumann > >Cc: Luciano, Joanne S.; Maged N.K. Boulos; > public-semweb-lifesci@w3.org > >Subject: Re: Vispedia: Interactive Visual Exploration of Wikipedia > Data > >via Search-Based Integration > >

Re: Vispedia: Interactive Visual Exploration of Wikipedia Data via Search-Based Integration

Interesting tool to view of data-- curious how it would compare to Simile's Exhibit, which works with both json and RDF... any takers? Eric On Mon, Nov 10, 2008 at 10:05 AM, Luciano, Joanne S. <[EMAIL PROTECTED]>wrote: > This is the Wikipedia data: > > Age Incidence >(new affected) >

eScience Workshop Birds of a Feather on Semantics, Dec 7-9, 2008

There will be a Semantic Birds-of-a-Feather session at the upcoming (Dec 7-9) eScience Workshop in Indianapolis organized by Microsoft. Please see http://research.microsoft.com/workshops/escience2008/Program.aspx for additional details. Registration is free, but people do need to register. If

Re: BioGateway

Ward, This indeed will be interesting to follow and compare to other Systems Biology initiatives within industry (especially those that include an ontological component). For example, I am currently working with one pharmaceutical on such an project, and it indeed would be useful to see how much ca

Re: An application of the Semantic Web for finding alternative drug applications

projects/stt/ > > > > > On Thu, Sep 11, 2008 at 10:50 AM, Kei Cheung <[EMAIL PROTECTED]> wrote: > >> >> Peter Ansell wrote: >> >>> - "Kei Cheung" <[EMAIL PROTECTED]> wrote: >>> >>> >>> >>>> Fr

An application of the Semantic Web for finding alternative drug applications

Below is the reference and link to the paper (presented at Bio-Ontologies, ISMB 2008) I mentioned during last week's HCLS call... Angela X. Qu et al. "Tamoxifen to Systemic Lupus Erythematosus:Constructing a Semantic Infrastructure to Enable Mechanism-based Reasoning andInference from Drugs to Dise

Re: BioRDF Announcement

a human-friendly UI, exploring mechanisms for updating the data > sources, and adding new data sets. > > Cheers, > > -Kei > > eric neumann wrote: > >> Hi Kei, Susie, >> >> Can you point me to the new objectives of BioRDF-- been out of the loop >> for a w

Re: BioRDF Announcement

Hi Kei, Susie, Can you point me to the new objectives of BioRDF-- been out of the loop for a while and would like to see our new directions based on our earlier lessons learned. cheers, Eric On Wed, Jul 16, 2008 at 10:48 PM, Kei Cheung <[EMAIL PROTECTED]> wrote: > > I am honored but also humbled

Re: Cross Language with topic maps [was Re: 答复: KB note]

Yeah you're right-- should have placed them in b-nodes... Eric On Thu, May 29, 2008 at 3:35 PM, Dan Brickley <[EMAIL PROTECTED]> wrote: > eric neumann wrote: > >> Why not simply use to following trick on top of universal symbols? >> >> > rdfs:label="Ma

PURLs of wisdom

While attending Semtech 2008 I was impressed with a number of interesting SW talks. One in particular is worth mentioning to the HCLSIG community regarding the roadmap to semanticizing data from authoritative sources. This applies to data from sources such as NCBI and EBI (Uniprot has taken the lea

Re: Remembering Bill Bug in the KB note

I think that would be thoughtful... Eric On Thu, May 29, 2008 at 10:10 PM, Alan Ruttenberg <[EMAIL PROTECTED]> wrote: > > I wonder if we could include a line remembering Bill Bug in the KB note. > Something simple along the lines of > "In memory of our friend and colleague William Bug, Ontologic

Re: Cross Language with topic maps [was Re: 答复: KB note]

e case is holistic in the sense that it is both > scientifically and technologically interesting. > > Thanks, > > -Kei > > eric neumann wrote: > >> Why not simply use to following trick on top of universal symbols? >> >> > rdfs:label="Mann" lang="

Re: Cross Language with topic maps [was Re: 答复: KB note]

Why not simply use to following trick on top of universal symbols? Eric 2008/5/28 Jack Park <[EMAIL PROTECTED]>: > > In cross-language data integration, it may be a simple matter of using a > multitude of language-scoped labels in an ontology. Another approach > that has been mentioned on this

FW: Bill Bug Memorial

I recently was informed of this sad and unexpected news... Bill contributed to many important efforts including HCLSIG-- we will miss him greatly. -Eric Begin forwarded message: *From: *"Jonathan Nissanov" <[EMAIL PROTECTED]> *Date: *May 22, 2008 6:40:44 AM PDT *To: *"[EMAIL PROTECTED]" <[EM

EpiSpider and Exhibit

EpiSpider began at CDC over a year ago-- they have now incorporated additional views and feeds showing diseases and events in different parts of the world. I thought it might be of interest in light of last tuesday's discussion, to take a look at one of their pages... http://www.epispider.org/inde

Re: BioRDF Brainstorming

I cannot make today's call, but I think it essential for any BioRDF project to consider how to include currently used terminologies such as those from UMLS. I don't know if Olivier Bodenreider has been on any of the calls recently, but his proposed offer to mint uris from CUI (UMLS, MeSH, etc) is s

REMINDER: Early Registration for CSHALS Ends February 6th

February 6, 2008 – join ISCB and register now for double savings! www.iscb.org/cshals2008/ Please feel free to circulate this announcement to anyone or any group possibly interested. C-SHALS Organizing Committee Eric Neumann, Clinical Semantics Group, Conference Chair Ted Slater, Pfizer, Co

Early Bird Registration for CSHALS Ends Feb 6th

6, 2008 – join ISCB and register now for double savings! www.iscb.org/cshals2008/ Please feel free to circulate this announcement to anyone or any group possibly interested. C-SHALS Organizing Committee Eric Neumann, Clinical Semantics Group, Teranode, Conference Chair Ted Slater, Pfi

CALL FOR PARTICIPATION – C-SHALS

ng Committee Eric Neumann, Clinical Semantics Group, Teranode, Conference Chair Ted Slater, Pfizer, Conference Co-Chair Sanjoy Ray, Merck, Conference Co-Chair David States, University of Michigan Hagit Shatkay, Queens University of Ontario

Re: [COI] Clinical Observations Interoperability Telcon December 18, Presentation of HL7/ RIM

Vipul, The first link should read: 1. Tim Berners Lee Keynote at the World Healthcare Innovation and Technology Congress.http://www.whitcongress.com -Eric On Dec 9, 2007 12:16 AM, Kashyap, Vipul <[EMAIL PROTECTED]> wrote: > > Please note that the COI Telcon for Dec

Today's HCLS TC Minutes

Minutes from today's call are at... http://www.w3.org/2007/12/06-hcls-minutes.html Thanks Susie! Eric

HCLS TC Thurs Dec 6th

Thurs, Dec 6, 2007 Teleconference Agenda: Time: 11:00 am EDT Dec 6, 2007 in America/New York for a duration of 1 hour Phone: tel:+1-617-761-6200 (Zakim) conference #4257 (HCLS) irc://irc.w3.org:6665/hcls Chairs: Eric Neumann, Tonya Hongsermeier Agenda: a) Convene, take roll, review previous

Cancelled: HCLS TC Nov 15

I apologize, I overlooked this week's schedule and missed the TC on my calendar. Since next week is Thanksgiving, I propose we plan our call on Nov 29th. Eric

Re: Meeting Record 1 Nov HCLSIG

es > > Present >Regrets >Chair > Eric Neumann > >Scribe > ericP > > Contents > > * [3]Topics > 1. [4]URI Note > 2. [5]f2f invitations >

RE: BioRDF Telcon

Susie, I'd like to add one more item to the BioRDF agenda, and if it doesn't make it for today let's put it on for the next week... In looking over past minutes I have not found any discussions that relates to how people using databases for proteins and the like are to map the "instances" in t

Minutes from HCLS TC Oct 18

The minutes from today's HCLS call can be found at... http://www.w3.org/2007/10/18-hcls-minutes.html Eric

HCLSIG TC Oct 18th

Thurs, October 18, 2007 Teleconference Agenda: Time: 11:00 am EDT Oct 18, 2007 in America/New York for a duration of 1 hour Phone: tel:+1-617-761-6200 (Zakim) conference #4257 (HCLS) irc://irc.w3.org:6665/hcls Chairs: Eric Neumann, Tonya Hongsermeier Agenda: a) Convene, take roll, review

Re: [HCLS] Demo KB Data Flow Diagram for PubMeSH Graph

[EMAIL PROTECTED] 412-683-1410 Eric Neumann, PhD Senior Strategist, Teranode Corporation W3C co-chair Healthcare and Life Sciences Interest Group MIT Fellow, Science Commons +1 781 856 9132

RE: HCLS Demo now hosted at DERI, Galway

That's great Matthias-- I hope we can use this to get European researchers to help contribute on both content and query examples. Is there a distribution network in palce for any HCLS demo additions made by contributors, so that all the sites would have access to the code? Eric -Origina

HCLSIG TC cancelled for 10-11-07

The HCLSIG TC cancelled for tomorrow, since Tonya and I will be meeting with the W3C team later this week. We will present a summary of the discussion at the next TC re-scheduled for 10-18-07. best, Eric Neumann Tonya Hongsermeier

Re: SWAP 2007 CfP, please circulate, submissions encouragement

titute (IST) Largo Rosanna Benzi, 10, I-16132, Genova, Italy Tel: +39-010-5737-288 Fax: +39-010-5737-295 Eric Neumann, PhD Senior Strategist, Teranode Corporation W3C co-chair Healthcare and Life Sciences Interest Group MIT Fellow, Science Commons +1 781 856 9132

RE: Chemical & Engineering News article on Semantic Web

e semantic web is." using http://babel.mrfeinberg.com/ with 'Spanish' -> "I know which is the semantic fabric.." ;-) Eric -Original Message- From: Bijan Parsia [mailto:[EMAIL PROTECTED] Sent: Tue 10/9/2007 2:06 PM To: Eric Neumann Cc: public-semwe

Chemical & Engineering News article on Semantic Web

FYI-- Forwarding an article, published by Chemical & Engineering News on the Semantic Web: "Pharma Researchers Adopt An Orphan Internet Standard" http://pubs.acs.org/email/cen/html/100807150541.html It has some quotes from members of our group. -Eric

RE: Surveillance Epidemiology and End Results (SEER)

Indeed this would be an interesting set to rdf-ize. It might also be interesting based on the dataset complexity (i.e., moderate complexity) to see what practical stratgey for RDF conversion one would choose. http://seer.cancer.gov/data/ Perhaps a few folks could look at this data structure,

HCLSIG TC Sept 27th

Thurs, September 27, 2007 Teleconference Agenda: Time: 11:00 am EDT Sept 27, 2007 in America/New York for a duration of 1 hour Phone: tel:+1-617-761-6200 (Zakim) conference #4257 (HCLS) irc://irc.w3.org:6665/hcls Chairs: Eric Neumann, Tonya Hongsermeier Agenda: a) Convene, take roll, review

RE: RE: RE: HCLS F2F

Rachel, The official dates for the (one and only) HCLSIG F2F are Nov 8-9 (thurs-fri). Eric -Original Message- From: Eric Prud'hommeaux [mailto:[EMAIL PROTECTED] Sent: Wed 9/19/2007 8:29 PM To: Rachel Richesson Cc: Eric Neumann; Susie M Stephens; public-semweb-lifesci@w3.org Subjec

RE: HCLS F2F

EricP, Is there a reason HCLS-F2F it also is scheduled for Saturday, Nov 10th? Eric -Original Message- From: [EMAIL PROTECTED] on behalf of Susie M Stephens Sent: Tue 9/18/2007 4:23 PM To: public-semweb-lifesci@w3.org Subject: Re: HCLS F2F There has been a slight change of plan, and

HCLSIG TC Sept 13th

Thurs, September 13, 2007 Teleconference Agenda: Time: 11:00 am EDT Sept 13, 2007 in America/New York for a duration of 1 hour Phone: tel:+1-617-761-6200 (Zakim) conference #4257 (HCLS) irc://irc.w3.org:6665/hcls Chairs: Eric Neumann, Tonya Hongsermeier Agenda: a) Convene, take roll, review

RE: [BIONT-DSE] Inclusion versus exclusion criteria

Alan, My guess (and some based from my own experience), is that it supports the way a lot of non-technical clinicians like to organize the process: 1) what I want, 2) what I must avoid. I beleive you are right that exlcusion is simply an explicit set of OR-ed negations. An interesting thing t

RE: NCBI Resource Locator

Jonathan, When did the paper come out that has the reference to this resource locator? Eric -Original Message- From: [EMAIL PROTECTED] on behalf of Jonathan Rees Sent: Mon 9/10/2007 5:00 PM To: public-semweb-lifesci hcls Subject: NCBI Resource Locator "The NCBI Resource Locator provi

RE: RDF123 maps spreadsheet data to RDF

Tim, Thank you for providing this useful link to a SW resource. I have a question : does your conversion assume each column can be represented as only a predicate type? If so, what about cases where the columns indicate objects, as in the gene expession as per the below example: -- tissue

Minutes from BIOONTDSEDCM TC Tues August 28

Folks, The minutes from today's BIOONTDSEDCM TC can be found at: http://www.w3.org/2007/08/28-hcls-minutes.html Rachel Richesson's Eligibility use case doc Landen Bain's CDISC-RFD slides are archived as resources at: http://esw.w3.org/topic/HCLS/OntologyTaskForce/BIONTDSEDCM The link requested

RE: [BIONT-DSE] Clinical Observations Interoperability Telcon August 28th, Tuesday 11:00am - 12:00pm US EDT

Hi Landen, Vipul will probably not be able tomake this call, but I agreed to help moderate it. Thanks for the slides! Eric -Original Message- From: Landen Bain [mailto:[EMAIL PROTECTED] Sent: Tue 8/28/2007 9:32 AM To: Kashyap, Vipul Cc: Alan Ruttenberg; Bron W. Kisler; Eric Neumann

RE: [Fwd: Re: identifier to use]

-Original Message- > From: Jonathan Rees [mailto:[EMAIL PROTECTED] > Sent: Sun 8/26/2007 8:46 PM > To: Eric Neumann > Cc: Mark Wilkinson; Hilmar Lapp; [EMAIL PROTECTED]; Miller, Michael D > (Rosetta); Eric Jain; Ricardo Pereira; public-semweb-lifesci; Sean Martin > Sub

RE: [Fwd: Re: identifier to use]

In an attempt to modulate the tone a bit, it's clear that with such a large and complex group of people and communities, many who had not been part of earlier OMG/I3C discussions are not aware of all the details of what had been discussed, proposed, and recommended. Having been a LSR-OMG chair

RE: making statements on the semantic web

What Michel is describing is also known as a 'reverse-indexer' (which is at the heart of Google's fast retrievals). It stores all the reverse references made to any URI X, so that by asking "what is all known about X", a list of all links and annotations to it can be retrieved. Some may recall

RE: Does follow-your-nose apply in the enterprise? was: RDF for molecules, using InChI

Jonathan, I would like to follow up with Bijan suggestion and try to phrase some of the 'disputes and considerations' in terms of problem statement and pro-con solutions. Can you help organize this and make sure it gets added to the URI Best Practices web site? thanks, Eric - On 21 Aug 2

RE: RDF for molecules, using InChI

al Message- From: Egon Willighagen [mailto:[EMAIL PROTECTED] Sent: Tue 8/21/2007 3:40 AM To: Eric Neumann Cc: public-semweb-lifesci@w3.org Subject: Re: RDF for molecules, using InChI Eric, On 8/18/07, Egon Willighagen <[EMAIL PROTECTED]> wrote: > On 8/17/07, Eric Neumann <[EMAIL PR

RE: RDF for molecules, using InChI

Egon, Thanks for the pointer-- is there a list of all the molecules you store something about? I've noticed your server will handle any InchI string it receives, though CIDs and other annotations will not be returned. Since one can determine the molecular weight from InchI, would it make sense

CANCELLED: HCLS TC Thurs 16, August

Many folks on vacation this week. We'll reschedule for end of August (30th). -Eric

RE: HCLS Demo at ISMB/ECCB, How to contribute to the demo?

-Original Message- From: [EMAIL PROTECTED] on behalf of Marco Brandizi Sent: Mon 8/13/2007 1:31 PM To: Eric Neumann Cc: W3C HCLSIG hcls; M. Scott Marshall Subject: Re: HCLS Demo at ISMB/ECCB, How to contribute to the demo? Eric Neumann wrote: > > I'll also add that there were

Proposed HCLSIG F2F: preferences on location and timing

http://upcoming.yahoo.com/event/144460/ Early December will likely be difficult for me, at least. -Alan Eric Neumann, PhD Senior Strategist, Teranode Corporation W3C co-chair Healthcare and Life Sciences Interest Group MIT Fellow, Science Commons +1 781 856 9132

Re: HCLS meeting record 2 Aug 2007

flow through to the membership organization's own members." -- http://www.w3.org/Consortium/membership-faq#memberOrg Eric Neumann, PhD Senior Strategist, Teranode Corporation W3C co-chair Healthcare and Life Sciences Interest Group MIT Fellow, Science Commons +1 781 856 9132

RE: HCLS Demo at ISMB/ECCB

PROTECTED] on behalf of Alan Ruttenberg Sent: Wed 8/8/2007 12:22 AM To: Eric Neumann Cc: W3C HCLSIG hcls; M. Scott Marshall Subject: Re: HCLS Demo at ISMB/ECCB Good news! Congrats and thanks, Eric! If you prepared any new materials (additional slides, etc) or have any tips on how you approac

RE: RDF for molecules, using InChI

si.edu/in-notes/rfc2396.txt ____ From: Eric Neumann [mailto:[EMAIL PROTECTED] Sent: Thursday, August 02, 2007 4:08 PM To: Michel_Dumontier; Egon Willighagen; public-semweb-lifesci@w3.org Subject: RE: RDF for molecules, using InChI Michel, For clarity sak

RE: RDF for molecules, using InChI

Michel, For clarity sake, can you give an example of your InChi URI ? urn?? Eric -Original Message- From: Michel_Dumontier [mailto:[EMAIL PROTECTED] Sent: Thu 8/2/2007 3:59 PM To: Eric Neumann; Egon Willighagen; public-semweb-lifesci@w3.org Subject: RE: RDF for molecules, using InChI

RE: RDF for molecules, using InChI

Egon, I commend you on two fronts: 1) developing a chem data model that utilizes InChi as part of the URI, and 2) demonstrating how something as simle as an XSLT can be used to organize viewable html ( I also see your OpenMolecules page supports the use of RDFa-- great job!). We've discussed

RE: HCLSIG TC Aug 2

: [EMAIL PROTECTED] on behalf of Eric Neumann Sent: Wed 8/1/2007 4:50 PM To: public-semweb-lifesci@w3.org Subject: HCLSIG TC Aug 2 Thurs, August 2 Teleconference Agenda: Time: 11:00 am EDT August 2, 2007 in America/New York for a duration of 1 hour Phone: tel:+1-617-761-6200 (Zakim) conference

HCLSIG TC Aug 2

Thurs, August 2 Teleconference Agenda: Time: 11:00 am EDT August 2, 2007 in America/New York for a duration of 1 hour Phone: tel:+1-617-761-6200 (Zakim) conference #4257 (HCLS) irc://irc.w3.org:6665/hcls Chairs: Eric Neumann, Tonya Hongsermeier Agenda: a) Convene, take roll, review previous

Paper: URI Identity Management for Semantic Web Data Integration and Linkage

A recent paper has been published that addresses some of the same URI issues we've been discussing: "URI Identity Management for Semantic Web Data Integration and Linkage" http://eprints.ecs.soton.ac.uk/14361/ They focus on Coreference aka Record Linkages, which deals with the problem of havin

CANCELLED: July 26 HCLS TC

, 2007 at 11am est. cheers, Tonya Hongsermeier and Eric Neumann, HCLSIG co-chairs The information transmitted in this electronic communication is intended only for the person or entity to whom it is addressed and may contain confidential and/or privileged material. Any review, retransmission

ISMB 2007 / MEET TO GO TO HEURIGER TONITE!

For those of you at ISMB, several of us are meeting at 7pm in front of the conference hall to go to a Heuriger (traditional wine and viennese food) in Grinzing (just north). If you miss us and still want to come, take the U4 underground to Heiligenstadt, then the 38A bus to "Fernsprechamt"...

RE: ISMB 2007

There are a couple of possible times to meet: 1) Saturday evening at the opening reception 2) At Matthias' poster on Sunday (2pm?) 3) Monday during the demo: Monday, July 23 11:20 a.m. - 11:45 a.m.Time: Room : Hall M -Eric -Original Message- From: [EMAIL PROTECT

FW: Semantic Web Health Care and Life Sciences Interest Group extended until 31 December 2007

I am pleased to announce to the HCLS group, that the AC has agreed to extend the current HCLSIG charter to Dec 31 2007. The original ending date was ambiguous (Sept 31, 2007 by most accounts), but the new date allows current HCLS activities to complete their tasks before the next charter would

Re: Ambiguous names. was: Re: URL +1, LSID -1

thinking, not the linguistic / textual surface representations. - Matthias Samwald Eric Neumann, PhD Senior Strategist, Teranode Corporation W3C co-chair Healthcare and Life Sciences Interest Group MIT Fellow, Science Commons +1 781 856 9132

Re: Ambiguous names. was: Re: URL +1, LSID -1

that isn't tied to a specific representation, hoped that would be clear? There are proteins, and there are records about proteins. Records come in different formats. If I make a statement using this url, is is about the record? or the protein? How should the agent come to know? -Alan

RE: 303 +1, WSDL -1

Two point to include... -Alan Ruttenberg wrote: - > Problem statement: > > Enable third parties to register the fact that they have additional > statements to provide about something that a URI denotes, in such a > way as to make it easy for anyone to discover this fact. Do this in

News item: Exhibit now supports RDFA

Thought this may be of interest to some of you... http://rdfa.info/2007/06/17/exhibit-now-supports-rdfa/ -Eric

RE: clinical trial instance data

Frank, Please look at the associated links at http://esw.w3.org/topic/HCLSIG/Drug_Safety_and_Efficacy. It contains links to some examples of CT instance data that were generated. As you'll also see, it does not use any CT ontology per se (though it clearly can accommdate them), since we are f

RE: Notes from Banff f2f

the intellectual or artistic realization of a work - the manifestation, the physical embodiment of an expression of a work - the item, a single exemplar of a manifestation. any takers? Eric -Original Message- From: Danny Ayers [mailto:[EMAIL PROTECTED] Sent: Thu 6/21/2007 11:39 AM To: Eric

RE: RE: [hcls] A map of the Semantic Web for life science and health care

ing "Proposed..." on some of these wiki pages ; otherwise it sounds to imposing without discussion or process... Eric -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] Sent: Fri 6/22/2007 2:34 PM To: Kashyap, Vipul; Eric Neumann Cc: public-semweb-lifesci@w3

Notes from Banff f2f

I've collected the notes from teh Banff f2f discussion and placed the at http://esw.w3.org/topic/HCLS/Banff2007/Informal_F2F -Eric

HCLSIG TC June 21

Thurs, June 21 Teleconference Agenda: Time: 11:00 am EDT June 21, 2007 in America/New York for a duration of 1 hour Phone: tel:+1-617-761-6200 (Zakim) conference #4257 (HCLS) irc://irc.w3.org:6665/hcls Chairs: Eric Neumann, Tonya Hongsermeier Agenda: a) Convene, take roll, review previous

RE: ISMB/ECCB2007 Demo Acceptance

-Centered Database (CCDB) and the Mouse > Brain Library (MBL) projects. > > Please let me know whether you think it would be appropriate to > include this in the ISMB demo, and I'll have the MBAT folks get in > touch. > > Cheers, > Bill > > On Jun 16, 2007, at 10:47

RE: Last Year's URI Discussion

I have been traveling a bit, and apologize that I have been slow to getting the notes from the Banff f2f discussion on URI's onto our site, but here's a synopsis for now: - syntax of URI's:http://auth.org/db/id , http://purl.org/auth/db/id , http://myorg.org?urn:lsid:auth:db:id - who sho

RE: Fwd: ISMB/ECCB2007 Demo Acceptance

Matthias, I think that would be great! thanks, Eric -Original Message- From: [EMAIL PROTECTED] on behalf of [EMAIL PROTECTED] Sent: Sat 6/16/2007 12:05 PM To: Eric Jain; public-semweb-lifesci@w3.org Subject: Re: Fwd: ISMB/ECCB2007 Demo Acceptance If there is interest, I could try to

RE: Fwd: ISMB/ECCB2007 Demo Acceptance

coordinate plans... Eric -Original Message- From: [EMAIL PROTECTED] on behalf of Eric Jain Sent: Sat 6/16/2007 11:21 AM To: public-semweb-lifesci@w3.org Subject: Re: Fwd: ISMB/ECCB2007 Demo Acceptance Eric Neumann wrote: > We have been given a slot to show the HCLS demo there (see be

RE: Fwd: ISMB/ECCB2007 Demo Acceptance

ully registered, though demo-ers (*hint*) will get a discount (?). We should definitely mention the poster during the demo... Eric -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] Sent: Sat 6/16/2007 10:55 AM To: Eric Neumann; public-semweb-lifesci@w3.org Subject: Re: Fwd

Fwd: ISMB/ECCB2007 Demo Acceptance

We have been given a slot to show the HCLS demo there (see below), so for those of you planning to be at ISMB next month, please be sure to attend/participate. Date and time of the demo to be announced... cheers, Eric --- Shoba Ranganathan <[EMAIL PROTECTED]> wrote: > Date: Sat, 9 Jun 2007 0

RE: Evidence

Thanks Vipul for putting this up! Eric -Original Message- From: Kashyap, Vipul [mailto:[EMAIL PROTECTED] Sent: Wed 6/13/2007 12:33 PM To: Eric Neumann; William Bug; public-semweb-lifesci hcls Cc: Waclaw Kusnierczyk; Barry Smith; Matthias Samwald Subject: RE: Evidence OK! The wiki

RE: Evidence

Thanks Vipul for putting this up! Eric -Original Message- From: Kashyap, Vipul [mailto:[EMAIL PROTECTED] Sent: Wed 6/13/2007 12:33 PM To: Eric Neumann; William Bug; public-semweb-lifesci hcls Cc: Waclaw Kusnierczyk; Barry Smith; Matthias Samwald Subject: RE: Evidence OK! The wiki

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