[LLD] W3C Note Dataset Descriptions telco today 10AM PST / 1PM EST / 6PM CET

2015-03-09 Thread M. Scott Marshall
Hello All, Just a reminder of our telco at 10AM PST / 1PM ET / 6PM CET. We are wrapping it up so this should be our last telco on the W3C Note on Dataset Descriptions. Relevant docs: Working draft of W3C Note: http://htmlpreview.github.io/?https://github.com/joejimbo/HCLSDatasetDescriptions

Re: [LLD] CANCELLED W3C Note Dataset Descriptions telco today 9AM PST / 12PM EST / 6PM CET

2015-03-06 Thread M. Scott Marshall
iology > > >> -Original Message- >> From: M. Scott Marshall [mailto:mscottmarsh...@gmail.com] >> Sent: Friday, March 06, 2015 6:49 AM >> To: HCLS >> Subject: [LLD] W3C Note Dataset Descriptions telco today 9AM PST / 12PM >> EST / 6PM CET >> >

RE: [LLD] W3C Note Dataset Descriptions telco today 9AM PST / 12PM EST / 6PM CET

2015-03-06 Thread Michael Miller
gt; To: HCLS > Subject: [LLD] W3C Note Dataset Descriptions telco today 9AM PST / 12PM > EST / 6PM CET > > Hello All, > > Just a reminder of our telco at 8AM PST / 11AM ET / 5PM CET. > We are wrapping it up so this should be our last telco on the W3C Note > on Dataset Descript

Fwd: [LLD] W3C Note Dataset Descriptions telco today 9AM PST / 12PM EST / 6PM CET

2015-03-06 Thread M. Scott Marshall
Correct time is: 9AM PST / 12PM EST / 6PM CET -- Forwarded message -- From: M. Scott Marshall Date: Fri, Mar 6, 2015 at 3:49 PM Subject: [LLD] W3C Note Dataset Descriptions telco today 9AM PST / 12PM EST / 6PM CET To: HCLS Hello All, Just a reminder of our telco at 8AM PST

[LLD] W3C Note Dataset Descriptions telco today 9AM PST / 12PM EST / 6PM CET

2015-03-06 Thread M. Scott Marshall
Hello All, Just a reminder of our telco at 8AM PST / 11AM ET / 5PM CET. We are wrapping it up so this should be our last telco on the W3C Note on Dataset Descriptions. Relevant docs: Working draft of W3C Note: http://htmlpreview.github.io/?https://github.com/joejimbo/HCLSDatasetDescriptions

[LLD] Reminder: Dataset Descriptions telco today 8AM PST / 11AM EST / 5PM CET

2015-03-02 Thread M. Scott Marshall
Hello All, Just a reminder of our telco at 8AM PST / 11AM ET / 5PM CET. We are wrapping it up so this should be our last telco on the W3C Note on Dataset Descriptions. Relevant docs: Working draft of W3C Note: http://htmlpreview.github.io/?https://github.com/joejimbo/HCLSDatasetDescriptions

Re: Dataset descriptions

2015-02-27 Thread Michel Dumontier
r J G [mailto:a.j.g.g...@hw.ac.uk] > *Sent:* 27 February 2015 13:57 > *To:* Winstanley FP (Peter) > *Cc:* public-semweb-lifesci@w3.org > *Subject:* Re: Dataset descriptions > > > > > > On 27 Feb 2015, at 13:51, Gray, Alasdair J G wrote: > > > > Hi Peter

RE: Dataset descriptions

2015-02-27 Thread Peter.Winstanley
provide a useful route to the development of additional modular ontologies if I could import the HCLS Dataset model as a single file. Peter From: Gray, Alasdair J G [mailto:a.j.g.g...@hw.ac.uk] Sent: 27 February 2015 13:57 To: Winstanley FP (Peter) Cc: public-semweb-lifesci@w3.org Subject: Re: Dataset

Re: Dataset descriptions

2015-02-27 Thread Gray, Alasdair J G
On 27 Feb 2015, at 13:51, Gray, Alasdair J G mailto:a.j.g.g...@hw.ac.uk>> wrote: Hi Peter We do not have an OWL file. We currently do now have an OWL file, the only descriptions exist as the table in the HTML document and a hopefully equivalent ShEx. Would you be looking for an OWL file conta

Re: Dataset descriptions

2015-02-27 Thread Gray, Alasdair J G
Hi Peter We currently do now have an OWL file, the only descriptions exist as the table in the HTML document and a hopefully equivalent ShEx. Would you be looking for an OWL file containing just the properties that we are using from the other ontologies? What would you be looking to do with the

Re: [LLD] CANCEL: Dataset Descriptions telco today 8AM PST / 11AM EST / 5PM CET

2015-02-23 Thread M. Scott Marshall
We will meet next Monday for the finishing touches on the W3C Note. Cheers, Scott On Mon, Feb 16, 2015 at 12:02 PM, M. Scott Marshall wrote: > Hello All, > > Just a reminder of our telco at 8AM PST / 11AM ET / 5PM CET. > > Relevant docs: > > Working draft of W3C Note: > http://htmlpreview.github

[LLD] Reminder: Dataset Descriptions telco today 8AM PST / 11AM EST / 5PM CET

2015-02-16 Thread M. Scott Marshall
Hello All, Just a reminder of our telco at 8AM PST / 11AM ET / 5PM CET. Relevant docs: Working draft of W3C Note: http://htmlpreview.github.io/?https://github.com/joejimbo/HCLSDatasetDescriptions/blob/master/Overview.html GitHub issue tracker system at: https://github.com/joejimbo/HCLSDatasetDe

RE: [LLD] Reminder: Dataset Descriptions telco today 8AM PST / 11AM EST / 5PM CET

2015-01-27 Thread Michael Miller
--Original Message- > From: Michel Dumontier [mailto:michel.dumont...@gmail.com] > Sent: Monday, January 26, 2015 1:54 PM > To: Michael Miller > Cc: HCLS > Subject: Re: [LLD] Reminder: Dataset Descriptions telco today 8AM PST / > 11AM EST / 5PM CET > > Hi Michael, > We wou

Re: [LLD] Reminder: Dataset Descriptions telco today 8AM PST / 11AM EST / 5PM CET

2015-01-26 Thread Michel Dumontier
t; >> -Original Message- >> From: Michel Dumontier [mailto:michel.dumont...@gmail.com] >> Sent: Monday, January 26, 2015 10:35 AM >> To: Michael Miller >> Cc: M. Scott Marshall; HCLS >> Subject: Re: [LLD] Reminder: Dataset Descriptions telco today 8AM PS

RE: [LLD] Reminder: Dataset Descriptions telco today 8AM PST / 11AM EST / 5PM CET

2015-01-26 Thread Michael Miller
26, 2015 10:35 AM > To: Michael Miller > Cc: M. Scott Marshall; HCLS > Subject: Re: [LLD] Reminder: Dataset Descriptions telco today 8AM PST / > 11AM EST / 5PM CET > > Hi Michael, > I think the core statistics probably could be used for non-RDF > datasets, but we haven

Re: [LLD] Reminder: Dataset Descriptions telco today 8AM PST / 11AM EST / 5PM CET

2015-01-26 Thread Michel Dumontier
ms Biology > > >> -Original Message- >> From: M. Scott Marshall [mailto:mscottmarsh...@gmail.com] >> Sent: Monday, January 26, 2015 5:15 AM >> To: HCLS >> Subject: [LLD] Reminder: Dataset Descriptions telco today 8AM PST / 11AM >> EST / 5PM CET >

RE: [LLD] Reminder: Dataset Descriptions telco today 8AM PST / 11AM EST / 5PM CET

2015-01-26 Thread Michael Miller
o: HCLS > Subject: [LLD] Reminder: Dataset Descriptions telco today 8AM PST / 11AM > EST / 5PM CET > > Hello All, > > Just a reminder of our telco at 8AM PST / 11AM ET / 5PM CET. > > Relevant docs: > > Working draft of W3C Note: > http://htmlpreview.github.io/?https://g

[LLD] Reminder: Dataset Descriptions telco today 8AM PST / 11AM EST / 5PM CET

2015-01-26 Thread M. Scott Marshall
Hello All, Just a reminder of our telco at 8AM PST / 11AM ET / 5PM CET. Relevant docs: Working draft of W3C Note: http://htmlpreview.github.io/?https://github.com/joejimbo/HCLSDatasetDescriptions/blob/master/Overview.html GitHub issue tracker system at: https://github.com/joejimbo/HCLSDatasetDe

[LLD] CANCELLED: Dataset Descriptions: no telco today (U.S. holiday)

2015-01-19 Thread M. Scott Marshall
Cancelling the telco. U.S. holiday. Talk to you next week! Cheers, Scott -- M. Scott Marshall, PhD MAASTRO clinic, http://www.maastro.nl/en/1/77/strategy-plan.aspx http://radiomics.org http://eurecaproject.eu/ http://semantic-dicom.org/ http://www.linkedin.com/pub/m-scott-marshall/5/464/a22

[LLD] Reminder: Dataset Descriptions telco today 8AM PST / 11AM EST / 5PM CET

2015-01-05 Thread M. Scott Marshall
Hello All, Just a reminder of our telco at 8AM PST / 11AM ET / 5PM CET. Relevant docs: Working draft of W3C Note: http://htmlpreview.github.io/?https://github.com/joejimbo/HCLSDatasetDescriptions/blob/master/Overview.html GitHub issue tracker system at: https://github.com/joejimbo/HCLSDatasetDe

RE: [LLD] Reminder: Dataset descriptions telco 8AM PST / 5PM CET

2014-11-17 Thread Michael Miller
com] > Sent: Monday, November 17, 2014 3:33 AM > To: HCLS > Subject: [LLD] Reminder: Dataset descriptions telco 8AM PST / 5PM CET > > Hello All, > > Just a reminder of our telco at 8AM PST / 11AM ET / 5PM CET. > > Relevant docs: > > Working draft of W3C Note: > h

[LLD] Reminder: Dataset descriptions telco 8AM PST / 5PM CET

2014-11-17 Thread M. Scott Marshall
Hello All, Just a reminder of our telco at 8AM PST / 11AM ET / 5PM CET. Relevant docs: Working draft of W3C Note: http://htmlpreview.github.io/?https://github.com/joejimbo/HCLSDatasetDescriptions/blob/master/Overview.html GitHub issue tracker system at: https://github.com/joejimbo/HCLSDatasetDe

[LLD] Reminder: Dataset descriptions telco 8AM PST / 5PM CET

2014-11-10 Thread M. Scott Marshall
Hello All, Just a reminder of our telco at 8AM PST / 5PM CET. Relevant docs: Working draft of W3C Note: http://htmlpreview.github.io/?https://github.com/joejimbo/HCLSDatasetDescriptions/blob/master/Overview.html GitHub issue tracker system at: https://github.com/joejimbo/HCLSDatasetDescriptions

RE: [LLD] Reminder: Dataset descriptions telco 8AM PST / 5PM CET

2014-11-05 Thread Michael Miller
-semweb-lifesci@w3.org *Subject:* Re: [LLD] Reminder: Dataset descriptions telco 8AM PST / 5PM CET Apologies from me, I’m in another meeting. I have updated the Open PHACTS use case which was one of the outstanding issues. I think the major stumbling block now is making the example consistent

Re: [LLD] Reminder: Dataset descriptions telco 8AM PST / 5PM CET

2014-11-03 Thread Gray, Alasdair
Apologies from me, I’m in another meeting. I have updated the Open PHACTS use case which was one of the outstanding issues. I think the major stumbling block now is making the example consistent with the recommendations in the text. It wasn’t when I last checked it against the validator a month

Re: [LLD] Reminder: Dataset descriptions telco 8AM PST / 5PM CET

2014-11-03 Thread M. Scott Marshall
Hi Alejandra, We already decided to cancel the call because there weren't enough participants today. See you next week! Best, Scott On Mon, Nov 3, 2014 at 5:29 PM, Alejandra Gonzalez-Beltran wrote: > Hi Scott, all, > > Could you share again the information to join the call? > > Thanks > > Alej

[LLD] Reminder: Dataset descriptions telco 8AM PST / 5PM CET

2014-11-03 Thread M. Scott Marshall
Hello All, Just a reminder of our telco at 8AM PST / 5PM CET. Relevant docs: - Working draft of W3C Note: http://htmlpreview.github.io/?https://github.com/joejimbo/HCLSDatasetDescriptions/blob/master/Overview.html Cheers, Scott -- M. Scott Marshall, PhD MAASTRO clinic, http://www.maastro.nl/en

Re: HCLS Dataset Descriptions -- stepping down as editor

2014-10-28 Thread M. Scott Marshall
Baran > wrote: > > Hello, > > > > I am sorry to say that I will no longer be able to act as an editor on > the > > HCLS Dataset Descriptions Community Profile. > > > > I had fun acting as an editor and it was great seeing how far the > document > &g

Re: HCLS Dataset Descriptions -- stepping down as editor

2014-10-28 Thread Michel Dumontier
I am sorry to say that I will no longer be able to act as an editor on the > HCLS Dataset Descriptions Community Profile. > > I had fun acting as an editor and it was great seeing how far the document > has come over the past months. I am sure that it will soon be finalized and

Re: HCLS Dataset Descriptions -- stepping down as editor

2014-10-28 Thread Gray, Alasdair
Hi Joachim, On 27 Oct 2014, at 18:04, Joachim Baran mailto:joachim.ba...@gmail.com>> wrote: Hello, I am sorry to say that I will no longer be able to act as an editor on the HCLS Dataset Descriptions Community Profile. It is a shame to see you step down from this role. I had fun

HCLS Dataset Descriptions -- stepping down as editor

2014-10-27 Thread Joachim Baran
Hello, I am sorry to say that I will no longer be able to act as an editor on the HCLS Dataset Descriptions Community Profile. I had fun acting as an editor and it was great seeing how far the document has come over the past months. I am sure that it will soon be finalized and that it will

[LLD] Today's Dataset Descriptions telco cancelled

2014-10-06 Thread M. Scott Marshall
Due to several who cannot make it to today's telco (including myself), we are cancelling today's telco. Cheers, Scott -- M. Scott Marshall, PhD MAASTRO clinic, http://www.maastro.nl/en/1/77/strategy-plan.aspx http://radiomics.org http://eurecaproject.eu/ http://semantic-dicom.org/ http://www.lin

Re: [LLD Reminder] Dataset Descriptions telco at 8 PST / 17 CET

2014-09-29 Thread M. Scott Marshall
Hi All, A quick reminder of the ongoing telco here (sorry to be late with this). -Scott -- M. Scott Marshall, PhD MAASTRO clinic, http://www.maastro.nl/en/1/77/strategy-plan.aspx http://radiomics.org http://eurecaproject.eu/ http://semantic-dicom.org/ http://www.linkedin.com/pub/m-scott-mars

[LLD Reminder] Dataset Descriptions telco at 8 PST / 17 CET

2014-09-22 Thread M. Scott Marshall
Hi All, A quick reminder of the telco here (a little late due to Sudden Laptop Death). -Scott -- M. Scott Marshall, PhD MAASTRO clinic, http://www.maastro.nl/en/1/77/strategy-plan.aspx http://radiomics.org http://eurecaproject.eu/ http://semantic-dicom.org/ http://www.linkedin.com/pub/m-scott-m

Re: [LLD] Reminder: Dataset descriptions telco 8AM PST / 5PM CET

2014-09-15 Thread Michel Dumontier
Apologies, can't join today. m > On Sep 15, 2014, at 7:25 AM, "M. Scott Marshall" > wrote: > > Hello All, > > Just a reminder of our telco at 8AM PST / 5PM CET. > > Relevant docs: - Working draft of W3C Note: > http://htmlpreview.github.io/?https://github.com/joejimbo/HCLSDatasetDescriptions

[LLD] Reminder: Dataset descriptions telco 8AM PST / 5PM CET

2014-09-15 Thread M. Scott Marshall
Hello All, Just a reminder of our telco at 8AM PST / 5PM CET. Relevant docs: - Working draft of W3C Note: http://htmlpreview.github.io/?https://github.com/joejimbo/HCLSDatasetDescriptions/blob/master/Overview.html Cheers, Scott -- M. Scott Marshall, PhD MAASTRO clinic, http://www.maastro.nl/en

Re: [LLD] Dataset descriptions note telco cancelled today

2014-09-08 Thread Joachim Baran
Hi! > On Sep 8, 2014, at 6:44 AM, "M. Scott Marshall" > wrote: > [...] because several of us cannot make it. I will not be able to make it that early anymore, but I am happy to contribute to getting the final HTML document out to Eric. Kim

[LLD] Dataset descriptions note telco cancelled today

2014-09-08 Thread M. Scott Marshall
Hello All, Cancelling the LLD Dataset descriptions telco that would have been at 8AM PST / 11AM EST / 17:00 CET because several of us cannot make it. There are some issues that we will hopefully be able to discuss next week. Cheers, Scott -- M. Scott Marshall, PhD MAASTRO clinic, http

[LLD] Dataset descriptions note telco cancelled today

2014-09-01 Thread M. Scott Marshall
Hello All, In case you didn't see the cancellation from the Google Calendar, we have cancelled the telco that would have been at 8AM PST / 11AM EST / 17:00 CET . Until next week!, Scott -- M. Scott Marshall, PhD MAASTRO clinic, http://www.maastro.nl/en/1/77/strategy-plan.aspx http://radiomics.o

Re: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-28 Thread Joachim Baran
Hi! On 28 August 2014 08:08, Michael Miller wrote: > i agree that it's hard to distinguish between 'clever and non-clever' > functions but not if you change the criteria to the distinction between > transforming and mapping functions upon the data themselves, here we have > a clear mapping func

RE: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-28 Thread Michael Miller
hcls; pav-ontol...@googlegroups.com *Subject:* Re: hcls dataset description comments--Dataset Descriptions vs. PROV I disagree. In my opinion it is subjective to use "import" when some unspecified functions are applied to the data that is being incorporated in a new dataset, but

Re: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-27 Thread Joachim Baran
//tcga-data.nci.nih.gov/tcga/tcgaDownload.jsp and >> https://tcga-data.nci.nih.gov/ccg-data-web/searchForTCGAData.htm >> >> [3] >> http://gdac.broadinstitute.org/runs/stddata__2014_07_15/data/STAD/20140715/ >> and the file >> gdac.broadinstitute.org_STAD.Merge_mirn

Re: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-27 Thread Stian Soiland-Reyes
ene_expression__data.Level_3.2014071500.0.0.tar.gz> > > > > > > *From:* st...@mygrid.org.uk [mailto:st...@mygrid.org.uk] *On Behalf Of *Stian > Soiland-Reyes > *Sent:* Wednesday, August 20, 2014 5:46 PM > *To:* Alasdair J G Gray > *Cc:* w3c semweb hcls; Joachim Baran;

[LLD] Reminder: Dataset descriptions telco 8AM PST / 5PM CET

2014-08-25 Thread M. Scott Marshall
Hello All, Just a reminder of our telco at 8AM PST / 5PM CET. Relevant docs: - Working draft of W3C Note: http://htmlpreview.github.io/?https://github.com/joejimbo/HCLSDatasetDescriptions/blob/master/Overview.html Cheers, Scott -- M. Scott Marshall, PhD MAASTRO clinic, http://www.maastro.nl/e

Re: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-25 Thread Gray, Alasdair J G
.@mygrid.org.uk<mailto:st...@mygrid.org.uk> [mailto:st...@mygrid.org.uk<mailto:st...@mygrid.org.uk>] On Behalf Of Stian Soiland-Reyes Sent: Wednesday, August 20, 2014 5:46 PM To: Alasdair J G Gray Cc: w3c semweb hcls; Joachim Baran; Michael Miller Subject: Re: hcls dataset description comme

RE: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-21 Thread Michael Miller
.@mygrid.org.uk [mailto:st...@mygrid.org.uk] *On Behalf Of *Stian Soiland-Reyes *Sent:* Wednesday, August 20, 2014 5:46 PM *To:* Alasdair J G Gray *Cc:* w3c semweb hcls; Joachim Baran; Michael Miller *Subject:* Re: hcls dataset description comments--Dataset Descriptions vs. PROV Hi, sorry for not re

Re: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-20 Thread Stian Soiland-Reyes
olve around taking the 3rd level data from the TCGA dcc repository > and doing analysis, producing 4th level data such as clusters, pca, etc. > one of the things we do here at ISB is produce an intermediate data step > that combines the different platforms (mRNA, miRNA, RPPA, METH, etc.) int

Re: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-20 Thread Michel Dumontier
gineer > > Institute for Systems Biology > > > > > > From: Joachim Baran [mailto:joachim.ba...@gmail.com] > Sent: Monday, August 11, 2014 8:00 AM > To: Michael Miller > > > Cc: Stian Soiland-Reyes; w3c semweb hcls > Subject: Re: hcls dataset description comm

RE: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-20 Thread Michael Miller
*Subject:* Re: hcls dataset description comments--Dataset Descriptions vs. PROV Great! Before you send the pull request, please make sure that W3C's HTML validation passes: http://validator.w3.org/#validate_by_input Kim On 9 August 2014 10:15, Michael Miller wrote: hi kim, i&#x

Re: [LLD] Reminder: Dataset descriptions telco 8AM PST / 5PM CET

2014-08-19 Thread Cartik Saravana Muthu
Hello everyone! My name is Cartik Saravanamuthu. Because my full name is even longer (!), I am also known as Cartik Kothari. I write this introduction at Scott Marshall's request from a teleconference earlier today. Some of you on this list may know me from before. At present, I am a postdoc worki

[LLD] Reminder: Dataset descriptions telco 8AM PST / 5PM CET

2014-08-18 Thread M. Scott Marshall
Hello All, Just a reminder of our telco at 8AM PST / 5PM CET. Relevant docs: - Working draft of W3C Note: http://htmlpreview.github.io/?https://github.com/joejimbo/HCLSDatasetDescriptions/blob/master/Overview.html Cheers, Scott -- M. Scott Marshall, PhD MAASTRO clinic, http://www.maastro.nl/

RE: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-11 Thread Michael Miller
ments--Dataset Descriptions vs. PROV Great! Before you send the pull request, please make sure that W3C's HTML validation passes: http://validator.w3.org/#validate_by_input Kim On 9 August 2014 10:15, Michael Miller wrote: hi kim, i've made decent progress and expect to have som

Re: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-11 Thread Joachim Baran
; > Sent: Friday, August 08, 2014 6:46 PM > > To: Michael Miller > > Cc: Stian Soiland-Reyes; w3c semweb hcls > > Subject: Re: hcls dataset description comments--Dataset Descriptions vs. > > PROV > > > > Hello, > > > > Has there been an update to

Re: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-11 Thread Gray, Alasdair J G
as some of my comments allude to, it doesn't seem that Dataset Descriptions deal with the use case of describing a dataset that is specifically derived from other datasets, which is what we are looking at ways we might describe our data when we publish it. i took a look at PROV and, i

[LLD] Reminder: Dataset descriptions telco 8AM PST / 5PM CET

2014-08-11 Thread M. Scott Marshall
Hello All, Just a reminder of our telco at 8AM PST / 5PM CET. Relevant docs: - Working draft of W3C Note: http://htmlpreview.github.io/?https://github.com/joejimbo/HCLSDatasetDescriptions/blob/master/Overview.html Cheers, Scott -- M. Scott Marshall, PhD MAASTRO clinic, http://www.maastro.nl/en

RE: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-09 Thread Michael Miller
achim Baran [mailto:joachim.ba...@gmail.com] > Sent: Friday, August 08, 2014 6:46 PM > To: Michael Miller > Cc: Stian Soiland-Reyes; w3c semweb hcls > Subject: Re: hcls dataset description comments--Dataset Descriptions vs. > PROV > > Hello, > > Has there been an update to this? Preferab

Re: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-08 Thread Joachim Baran
neer > Institute for Systems Biology > > >> -Original Message- >> From: st...@mygrid.org.uk [mailto:st...@mygrid.org.uk] On Behalf Of Stian >> Soiland-Reyes >> Sent: Tuesday, August 05, 2014 5:38 AM >> To: Michael Miller >> Cc: Joachim Baran; w3c semwe

RE: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-05 Thread Michael Miller
gt; To: Michael Miller > Cc: Joachim Baran; w3c semweb hcls > Subject: Re: hcls dataset description comments--Dataset Descriptions vs. > PROV > > Just some inputs: > > > PROV defines prov:wasDerivedFrom which in broad sense describes such a > relationset between datasets. How

Re: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-05 Thread Stian Soiland-Reyes
fferent platforms (mRNA, miRNA, RPPA, METH, etc.) into > one feature matrix so that the analysis can use all the platforms together. > the Broad firehose pipeline also has this as one of its outputs. > > > > as some of my comments allude to, it doesn't seem that Dataset

Re: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-04 Thread Melissa Haendel
oftware Engineer Institute for Systems Biology -Original Message- From: Michel Dumontier [mailto:michel.dumont...@gmail.com<http://gmail.com>] Sent: Monday, August 04, 2014 10:14 AM To: Joachim Baran Cc: Michael Miller; w3c semweb hcls Subject: Re: hcls dataset description comments--Dataset

RE: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-04 Thread Michael Miller
gt; To: Joachim Baran > Cc: Michael Miller; w3c semweb hcls > Subject: Re: hcls dataset description comments--Dataset Descriptions vs. > PROV > > On Mon, Aug 4, 2014 at 10:08 AM, Joachim Baran > wrote: > > Having said that, our note apparently is not clear on that particular

Re: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-04 Thread Michel Dumontier
On Mon, Aug 4, 2014 at 10:08 AM, Joachim Baran wrote: > Having said that, our note apparently is not clear on that particular > aspect. We will see what we can do about this. We would welcome some prose from you and Melissa so that it communicates what you feel is necessary for other potential us

Re: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-04 Thread Joachim Baran
Hi! Relations between dataset descriptions are actually supported and we addressed derived datasets. Having said that, our note apparently is not clear on that particular aspect. We will see what we can do about this. Kim > On Aug 4, 2014, at 9:44 AM, Michael Miller > wrote: >

RE: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-04 Thread Michael Miller
el Michael Miller Software Engineer Institute for Systems Biology *From:* Melissa Haendel [mailto:haen...@ohsu.edu] *Sent:* Monday, August 04, 2014 9:56 AM *To:* Michael Miller *Cc:* Joachim Baran; w3c semweb hcls *Subject:* Re: hcls dataset description comments--Dataset Descriptions vs

Re: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-04 Thread Melissa Haendel
its outputs. as some of my comments allude to, it doesn't seem that Dataset Descriptions deal with the use case of describing a dataset that is specifically derived from other datasets, which is what we are looking at ways we might describe our data when we publish it. i took a look at PROV

RE: hcls dataset description comments--Dataset Descriptions vs. PROV

2014-08-04 Thread Michael Miller
e terms we need. but this has lead me to ask the question of what is the relation of Dataset Descriptions and PROV and how should they/should they be used together? i think the above use case is quite common for datasets being published so might deserve a discussion in the Dataset Descriptions note

[LLD] Reminder: Dataset descriptions telco 8AM PST / 5PM CET

2014-08-04 Thread M. Scott Marshall
Hello All, Just a reminder of our telco at 8AM PST / 5PM CET. Relevant docs: - Working draft of W3C Note: http://htmlpreview.github.io/?https://github.com/joejimbo/HCLSDatasetDescriptions/blob/master/Overview.html Cheers, Scott -- M. Scott Marshall, PhD MAASTRO clinic, http://www.maastro.nl/en

[LLD] REMINDER: Dataset descriptions teleconference 8 PST / 17 CET

2014-06-16 Thread M. Scott Marshall
Dear all, A reminder of our teleconference today to discuss the W3C Note at http://htmlpreview.github.io/?https://github.com/joejimbo/HCLSDatasetDescriptions/blob/master/Overview.html . Also, we are still requesting comments. We are especially interested in hearing about any experiences from thos

[LLD] Dataset Descriptions W3C Note - Request for Comments

2014-04-14 Thread M. Scott Marshall
Dear All, In the Linked Life Data task force, we have defined an approach for describing datasets in RDF so that they can be discovered, evaluated, and queried using SPARQL. We are now requesting your comments on the resulting document. We would like this document to serve as a common choice of v

Dataset Descriptions

2014-03-17 Thread Joachim Baran
Hello,   I have added a few example numbers and URIs in the RDF example in the appendix section (http://htmlpreview.github.io/?https://github.com/joejimbo/HCLSDatasetDescriptions/blob/master/Overview.html#appendix).   It would be great if the new contents could be “signed off” by another person

Re: dataset descriptions

2014-02-17 Thread Michel Dumontier
It was primarily to explore the possibility of expressing any arbitrary division of a dataset, including a version, as a proper subset. Unfortunately, there is no reason to believe that a subset itself would have versions, and so on. So, I think we are better served by our original model, and that

Re: dataset descriptions

2014-02-17 Thread Alasdair J G Gray
Hi I am trying to catch up with what has been going on in the last week or so. On the issue of versions, from what I see in the diagrams you are proposing a change of predicate from one that states that we are describing a version of a resource to a more general there is some resource that is a s

Re: dataset descriptions

2014-02-13 Thread Joachim Baran
difficulties as it was up to the user to decide (arbitrarily) how to model a given thing.   I hope this helps.   Thanks, Bob   From: Michel Dumontier [mailto:michel.dumont...@gmail.com] Sent: Monday, February 10, 2014 2:34 PM To: w3c semweb hcls Cc: Alasdair Gray Subject: dataset descriptions

Re: dataset descriptions

2014-02-12 Thread Michel Dumontier
to the user to decide (arbitrarily) how to model a given thing. > > > > I hope this helps. > > > > Thanks, > > Bob > > > > *From:* Michel Dumontier [mailto:michel.dumont...@gmail.com] > *Sent:* Monday, February 10, 2014 2:34 PM > *To:* w3c semweb hcls &

RE: dataset descriptions

2014-02-10 Thread Freimuth, Robert R., Ph.D.
was up to the user to decide (arbitrarily) how to model a given thing. I hope this helps. Thanks, Bob From: Michel Dumontier [mailto:michel.dumont...@gmail.com] Sent: Monday, February 10, 2014 2:34 PM To: w3c semweb hcls Cc: Alasdair Gray Subject: dataset descriptions Hi all, on today's c

dataset descriptions

2014-02-10 Thread Michel Dumontier
Hi all, on today's call we got some feedback from Chris Mungall, Melissa Haendel, and Harry Hochheiser. Chris asked whether (and how), we could make arbitrary collections, for instance, chembl-rdf as a dataset (without necessarily specifying the version). i wondered if perhaps we could generalize

LLD dataset descriptions

2014-02-06 Thread Michel Dumontier
Hi all, just an update. I updated the overview figure and segregated the examples from the text. I worked on the identifier section, and added sparql queries to the statistics section. Nick & Camille, I've put in some placeholder relations that would be provided by identifiers.org: idot:preferre

Re: [LLD] Dataset Descriptions W3C Note

2014-01-05 Thread M. Scott Marshall
all < > mscottmarsh...@gmail.com> wrote: > >> Dear All, >> >> We will look at progress on the W3C Note for Dataset Descriptions >> tomorrow at 8AM PST / 11AM EST / 5PM CET. >> >> Cheers, >> Scott >> >> -- >&g

Re: [LLD] Dataset Descriptions W3C Note

2013-12-16 Thread M. Scott Marshall
le (identify outstanding and assign 2 > individuals - one to write the other to edit.) > - we'll need to identify implementors, timelines for data availability > - we need to include desired SPARQL queries (within and across dataset > descriptions). > > Best, > > m. &

Re: [LLD] Dataset Descriptions W3C Note

2013-12-16 Thread M. Scott Marshall
RC: irc.w3.org<https://www.google.com/url?q=http%3A%2F%2Firc.w3.org&usd=2&usg=AFQjCNGyvJWqmBFYeGsEXwKaQZ3endepYA>port 6665 channel #HCLS On Sun, Dec 15, 2013 at 10:14 PM, M. Scott Marshall < mscottmarsh...@gmail.com> wrote: > Dear All, > > We will look at progress o

Re: [LLD] Dataset Descriptions W3C Note

2013-12-15 Thread Michel Dumontier
and example (identify outstanding and assign 2 individuals - one to write the other to edit.) - we'll need to identify implementors, timelines for data availability - we need to include desired SPARQL queries (within and across dataset descriptions). Best, m. On Sun, Dec 15, 2013 at 1:14

Re: [LLD] Dataset Descriptions W3C Note

2013-12-15 Thread M. Scott Marshall
Dear All, We will look at progress on the W3C Note for Dataset Descriptions tomorrow at 8AM PST / 11AM EST / 5PM CET. Cheers, Scott -- M. Scott Marshall, PhD MAASTRO clinic, http://www.maastro.nl/en/1/ http://eurecaproject.eu/ http://semantic-dicom.org/ https://plus.google.com/u/0

Re: [LLD] Dataset Descriptions W3C Note

2013-12-05 Thread M. Scott Marshall
The winner of the poll is 4PM CET / 10AM ET Friday Dec. 6. -Scott On Dec 2, 2013 11:20 PM, "M. Scott Marshall" wrote: > > Today's telco was cancelled due to lack of turnout. Let's try to find a > day at the end of this week to revisit the document and see how it is > coming along. Next week will

Re: [LLD] Dataset Descriptions W3C Note

2013-12-04 Thread M. Scott Marshall
Only 4 of us have filled in the poll for a time slot on Thu or Fri, with 2 possibilities on Fri. If enough additional people sign up in the poll for Friday, maybe we should go through with it. In any case, we should remove Thu from consideration. -Scott On Mon, Dec 2, 2013 at 11:20 PM, M. Scott

[LLD] Dataset Descriptions W3C Note

2013-12-02 Thread M. Scott Marshall
Today's telco was cancelled due to lack of turnout. Let's try to find a day at the end of this week to revisit the document and see how it is coming along. Next week will be difficult at the usual time because several of us will either be traveling to or attending SWAT4LS, so we've tentatively sche

Re: [LLD] Reminder: Dataset descriptions 5PM CET / 11AM ET Monday Nov 25

2013-11-24 Thread Joachim Baran
On Nov 24, 2013, at 1:20 PM, Timothy W. Cook wrote: > I hope there will be minutes or a recording as I will be at a startup > challenge finals event tomorrow. Minutes are usually sent to this list shortly after the meeting finishes. As far as I know, there are no recordings available. Joachim

Re: [LLD] Reminder: Dataset descriptions 5PM CET / 11AM ET Monday Nov 25

2013-11-24 Thread Timothy W. Cook
I hope there will be minutes or a recording as I will be at a startup challenge finals event tomorrow. --Tim On Sun, Nov 24, 2013 at 3:47 PM, M. Scott Marshall wrote: > I will likely be late because my plane lands at 16:10 but Michel will chair. > -Scott > > Duration: ~1 hour (Variable) frequenc

[LLD] Reminder: Dataset descriptions 5PM CET / 11AM ET Monday Nov 25

2013-11-24 Thread M. Scott Marshall
I will likely be late because my plane lands at 16:10 but Michel will chair. -Scott Duration: ~1 hour (Variable) frequency: ~weekly to bi-weekly Convener: M. Scott Marshall Zakim (W3C teleconference bridge). Dial-In #: +1.617.761.6200 (Cambridge, MA) VoIP address: sip:zakim@voip.w3.orgParticipant

Re: Dataset descriptions document progress

2013-11-11 Thread M. Scott Marshall
I have cancelled the event for today on the HCLS Google calendar so you should receive a notification of the cancellation soon. I have contacted a few people, as discussed last week. Hopefully, they can make it to a call next week. Sorry - never sent a Doodle poll as promised. Decided to just try

Re: Dataset descriptions document progress

2013-11-11 Thread Michel Dumontier
Hi, i'm going to suggest we postpone the call until next week. please take this time to fill in your assigned sections and review what Alasdair amd others have done. please use the commenting tool to record your comments thanks! m > On Nov 11, 2013, at 6:50 AM, "Gray, Alasdair J G" wrote: >

Dataset descriptions document progress

2013-11-11 Thread Gray, Alasdair J G
Hi All, Sorry that I cannot make the call this afternoon. I have been working on transcribing the spreadsheet into the working document. I believe that I have finished the unversioned-unformatted section. There are several open issues here. I have completed the core information and provenance

Re: HCLS dataset descriptions call notes

2013-09-10 Thread Jim McCusker
That makes sense, then. Jim On Tue, Sep 10, 2013 at 11:11 AM, Alasdair J G Gray < alasdair.g...@manchester.ac.uk> wrote: > Hi Jim, > > On 10 Sep 2013, at 16:02, Jim McCusker wrote: > > I think Jerven's point is that it's unclear why having additional > properties would warrant an error or a wa

Re: HCLS dataset descriptions call notes

2013-09-10 Thread Jim McCusker
I think Jerven's point is that it's unclear why having additional properties would warrant an error or a warning, when this is actually a good thing. Jim On Tue, Sep 10, 2013 at 10:58 AM, Alasdair J G Gray < alasdair.g...@manchester.ac.uk> wrote: > Jerven, hello. > > I should have stated in the

Re: HCLS dataset descriptions call notes

2013-09-10 Thread Alasdair J G Gray
Jerven, hello. I should have stated in the notes yesterday that the current validator is not complete. (I'm afraid I've been too busy to be able to complete this part of the work.) On 9 Sep 2013, at 17:43, Jerven Bolleman wrote: > Hi All, > > Thanks for starting up again, and sorry for missi

Re: HCLS dataset descriptions call notes

2013-09-10 Thread Alasdair J G Gray
Hi Jim, On 10 Sep 2013, at 16:02, Jim McCusker wrote: > I think Jerven's point is that it's unclear why having additional properties > would warrant an error or a warning, when this is actually a good thing. I agree and understand your point. What I was meaning was that it would be flagged in

Re: HCLS dataset descriptions call notes

2013-09-09 Thread Jerven Bolleman
Hi All, Thanks for starting up again, and sorry for missing this. I had a quick question about the validator. Currently it seems to fail if a resource has an unknown type such as foaf:Organization . Is this correct? or is my dyslexia getting the better of me? Regards, Jerven On Mon, Sep 9, 201

HCLS dataset descriptions call notes

2013-09-09 Thread Alasdair J G Gray
Hi allAttached are the notes that I took during the call today.Speak to you all next week.Alasdair Untitled.pdf Description: Adobe PDF document Dr Alasdair J G GrayResearch Associatealasdair.g...@manchester.ac.ukhttp://www.cs.man.ac.uk/~graya/Please consider the environment before printing this e

[LLD] Dataset descriptions in Open PHACTS

2013-01-14 Thread M. Scott Marshall
Please note: this is *not* a G+ Hangout this time. We are using Zakim / IRC as announced: http://www.w3.org/wiki/HCLSIG/LLD/Meetings/2013-01-14_Conference_Call Slides can be found at: http://www.slideshare.net/alasdair_gray/2013-0114-opsdatasetdescriptions Cheers, Scott -- M. Scott Marshall, P

[LLD] "Dataset Descriptions in the Open PHACTS Project", Monday Jan. 14, 11AM ET / 5PM CET

2013-01-12 Thread M. Scott Marshall
is related to ongoing work from the dbcatalog group of the Biohackathon 2011 in Kyoto. -- Dataset Descriptions in the Open PHACTS Project *Abstract* Alice: "What version of ChEMBL are we using?" Bob: "Er…let me check. It's going to take a whi