[PyMOL] Transparency in cartoons

Hello! I'm trying to show some aminoacids transparent in a cartoon view. I use the command cmd.set("transparency", "0.8" ,"(resi " + values[0] + ":" + values[1] + ")"). When i see the cartoon view, happens nothing, but if I use "show surface" the transparency is shown. Do you know how to do it in

Re: [PyMOL] Transparency in cartoons

On Tuesday 22 January 2008 10:10:58 Toni Pizà wrote: > I'm trying to show some aminoacids transparent in a cartoon view. I > use the command cmd.set("transparency", "0.8" ,"(resi " + values[0] + > ":" + values[1] + ")"). > > When i see the cartoon view, happens nothing, but if I use "show > surface

Re: [PyMOL] Distance and scripts

On Monday 21 January 2008 23:51:15 Toni Pizà wrote: > > I'm not sure this is what you're asking, but I use scripts by typing: > > > > @script.pml > > Thanks for your response, but I'm asking how to pass arguments to > pymol's scripts written in Python. I type "run nameOfScript.py" within > pymol fo

[PyMOL] Subject: Transparency in cartoons

> When i see the cartoon view, happens nothing, but if I use "show > surface" the transparency is shown. Do you know how to do it in the > cartoon view? Toni, Set the "cartoon_transparency", not just "transparency". Here's the appropriate PyMOLWiki link: http://www.pymolwiki.org/index.php/Cartoo

Re: [PyMOL] PyMOL-users Digest, Vol 20, Issue 6

Hi Toni, I think the variable you want to set is "cartoon_transparency" not "transparency". The way I figured this out was through the menu->settings->Edit All... dialog box. Matt > Date: Tue, 22 Jan 2008 10:10:58 +0100 > From: " Toni Piz? " > Subject: [PyMOL] Transparency in cartoons > To: