[PyMOL] Transparency in cartoons

Hello! I'm trying to show some aminoacids transparent in a cartoon view. I use the command cmd.set(transparency, 0.8 ,(resi + values[0] + : + values[1] + )). When i see the cartoon view, happens nothing, but if I use show surface the transparency is shown. Do you know how to do it in the

Re: [PyMOL] Transparency in cartoons

On Tuesday 22 January 2008 10:10:58 Toni Pizà wrote: I'm trying to show some aminoacids transparent in a cartoon view. I use the command cmd.set(transparency, 0.8 ,(resi + values[0] + : + values[1] + )). When i see the cartoon view, happens nothing, but if I use show surface the

Re: [PyMOL] Distance and scripts

On Monday 21 January 2008 23:51:15 Toni Pizà wrote: I'm not sure this is what you're asking, but I use scripts by typing: @script.pml Thanks for your response, but I'm asking how to pass arguments to pymol's scripts written in Python. I type run nameOfScript.py within pymol for this, but

[PyMOL] Subject: Transparency in cartoons

When i see the cartoon view, happens nothing, but if I use show surface the transparency is shown. Do you know how to do it in the cartoon view? Toni, Set the cartoon_transparency, not just transparency. Here's the appropriate PyMOLWiki link:

Re: [PyMOL] PyMOL-users Digest, Vol 20, Issue 6

Hi Toni, I think the variable you want to set is cartoon_transparency not transparency. The way I figured this out was through the menu-settings-Edit All... dialog box. Matt Date: Tue, 22 Jan 2008 10:10:58 +0100 From: Toni Piz? servo...@gmail.com Subject: [PyMOL] Transparency in