protein 1b8e says its a dimer by its pdb file info as:
BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.00 0.00 0.000.0
REMARK 350 BIOMT2 1 0.00 1.00 0.00
Why do you expect PISA to agree with
author assigned biological units?
Read the paper and see if there's a reason
the authors made the assignment.
If you really don't understand why things
might be different, read the intro to the
ProtCID paper.
-David
On Mar 3, 2011, at 6:37 AM, kanika
ya,i get it...
Thanks...
On Thu, Mar 3, 2011 at 5:58 PM, Tsjerk Wassenaar tsje...@gmail.com wrote:
Hi Kanika,
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
It says 'author determined'. It doesn't say how, though. But look at
the following:
# Get the molecule
fetch 1b8e,async=0
Hello Tsjerk,
I can use the function and commands. print clipped(clipsed) - but not
print clipped(3lzt) - shows the indices of the atoms between the
clipping planes
Tsjerk Wassenaar wrote:
Hi Johannes,
Coincidentally, I found myself in need of the same functionality the
other day. I came
Hi Johannes,
I can use the function and commands. print clipped(clipsed) - but not
print clipped(3lzt) - shows the indices of the atoms between the clipping
planes
print clipped(3lzt) should print the indices of atoms that are
clipped off by the clipping planes. That works for me, but in
