Hi Adam,
this seems to be not yet fully implemented with the new shader
rendering. So you may turn shaders off for now:
PyMOL unset use_shaders
Ray tracing is not affected, so you still can generate high quality
figures with correct colors:
PyMOL ray
Hope that helps.
Cheers,
Thomas
H.
Hi Sri,
if you have your structure loaded into PyMOL, you can make named
selections for your peptide sequences like this:
select pep1, pepseq RMFLS
select pep2, pepseq KGHGK
select pep3, pepseq ALSDL
There are also scripts available for pattern matching, for example:
Hi Per,
you may check the volume_esp function here:
https://github.com/speleo3/pymol-psico/blob/master/psico/electrostatics.py
As Jason said in that earlier thread, the volume API is work in progress
and will probably change soon.
Cheers,
Thomas
Per Larsson wrote, On 11/21/12 19:01:
Hi Jonny,
I think it should be sufficient to have the atom names along the
backbone correct (CA, N, C) and to have increasing residue numbering. If
you like you can send me your file and I'll have a look.
Cheers,
Thomas
Johnny Pham wrote, On 11/15/12 09:41:
Hi,
I was wondering if I have
Thanks Thomas, that does work.
On Nov 23, 2012, at 6:31 AM, Thomas Holder wrote:
Hi Adam,
this seems to be not yet fully implemented with the new shader
rendering. So you may turn shaders off for now:
PyMOL unset use_shaders
Ray tracing is not affected, so you still can generate high
