l want to put it in a script, wrap it
with a function, etc... I haven't test the above though.
Dan Kulp wrote:
I just needed to do this and this was my solution
NTH_RESIDUE=3
cmd.select("myselection", "molecule1 and chain A and resi %s" %
(cmd.get_model("molecule1 an
sourceforge.net/lists/listinfo/pymol-users
--
Dan Kulp
Biophysics Graduate Student @ UPenn
dwk...@mail.med.upenn.edu
http://dwkulp.homelinux.net/tiki/tiki-index.php
--
Anyone ever done this ? For example if you had a surface
representation in one object and a cartoon representation in another,
could you clip the surface but not the cartoon ?
This would give you an alternative to fiddling with the transparency of
the surface.
Thanks,
Dan
--
Dan Kulp
will start at regular speed. Thanks for the catching the 'bug' Xavier.
I beleive the mutagensis wizard in the newer ( > 0.98) will incorporate
the Dunbrack library in some way or another.
~Dan Kulp
Xavier Deupi wrote:
Hi,
I've just realized that through the mutagenesis wiza
Uwe,
One way to do this is to override the B-factor column of a pdb file with
the partial chages (ESP). Then pymol can "color by B-factor".
Let me know how you decide to do this or if you have questions about the
B-factor method.
Dan
Uwe Richter wrote:
Dear Pymol users,
I have calculated
Warren + Community,
What about non-Mac users ? Also there is a great solution for
interactive conferences called www.gotomeeting.com. I'm not sure if
there is video conferencing or not. However, the conference call
(without a conference call phone) and the desktop sharing was superb for
bject, which you can do anything you want with. In the example I
simply printed them out.
To run example below (if saved as distlist.py) from pymol:
run distlist.py
~ Dan
---
Dan Kulp
Biophysics Graduate Student @ UPenn
dwk...@mail.med.upenn.edu
http://dwkulp.homelinux.net/tiki/tiki-inde
I looked into this a little. I think the apbs script (its apbs.py or
something -- if you can't find it search for it on google) calls a
function called cmd.ramp_new() with a bunch of arguements. Apparently
this 'ramp' is a built in c-level object. You maybe able to mimic the
code in apbs.
oduct. Thus
reversing the camera rotation for that specific object. Do I have to
first translate the object to the "origin of rotation" (the 9-12 values
of get_view() ?)
Is there a better/already implemented way to do this?
Any help would be appreciated.
Thanks,
Dan Kulp
