Hello,
I wonder if there is a quick and simple way of detecting whether a selection
exists without triggering any errors. e.g. to check if there are currently any
atoms picked (and collect the residue IDs if there is any), I do:
cmd.iterate((lb),stored.list.append((resi)))
if no atoms were
Hello,
I have two questions:
1. I want to superpose object1 and object2 on top of each other, and have
derived a rotation matrix to transform object2 by. How do I apply this matrix
to all its atoms? Either I parse its PDB coordinates, multiply them by the
matrix, and load the object (which can
Hello,
I have two operations that I want to perform, and am not aware of a simple way
(if possible) of doing them. So here it goes:
1. how (if possible) to retrieve the color for a residue as identified in an
expression, e.g. resi 9? Note that it's not a range so no multiple answers
is possible.
Hello,
I'm trying to add another external GUI to be positioned at the bottom of the
structure window for displaying sequence alignments, with not much luck. Here
is what I want and what I've done:
Goal: when opening a sequence alignment file in the existing GUI, launch a new
GUI at the bottom
understand why it
doesn't import that. Anyways, it seems to be up. I guess every time I build
PyMOL, I'll have to copy the _cmd.pyd file over.
Tina
- Original Message -
| From: Tina Li t...@bioinformaticssolutions.com
| To: pymol-users@lists.sourceforge.net
| Date: Mon, 25 Aug 2003 11:57:27 -0400
...@delanoscientific.com
To: 'Tina Li' t...@bioinformaticssolutions.com;
pymol-users@lists.sourceforge.net
Sent: Wednesday, August 27, 2003 2:32 PM
Subject: RE: [PyMOL] Re: cannot find _cmd module
| Tina,
|
| Did you do a full installation? After running:
|
| python setup.py build install
| python setup2.py
Hello,
Eh, I think this is a rather basic question. So I built PyMOL on Win32, tried
to run pymol.bat, which calls python $PYMOL_PATH/modules/pymol/__init__.py,
which complained:
Traceback (most recent call last):
File D:\thli\root\misc\pymol-0.90\modules\pymol\__init__.py, line 92, in ?
Hello,
I'm wondering if it's possible to simulate RasMol-styled strand
representation (a number of smooth curves that run parallel to one another
along the peptide plane of each residue). I would like something like that to
repersent gaps in a structural alignment (i.e. a segment that doesn't
Hello,
We plan to use PyMOL as the alignment/structure viewer in a protein
threading package we developed. Mostly there will be some new
features/enhancements on the existing viewer. e.g.
- highlight/color by mappings of amino acid porperties (cysteines, charge
and hydrophobicity, size,
