Oh, please nevermind. I've already got it sorted. Thank you.
Suhaila
Date: Wed, 21 Mar 2012 06:31:40 +0100
Subject: Re: [PyMOL] Error running Contact Map Visualizer Plugin
From: tsje...@gmail.com
To: bell_beaut...@hotmail.com
CC: pymol-users@lists.sourceforge.net
Hi Suheila,
What were the exact
Hi Suheila,
What were the exact commands you used, and what error did it come up with?
Just saying you tried mogrify and convert and the error was still there
isn't very informative to us.
Cheers,
Tsjerk
On Mar 18, 2012 2:39 PM, Suhaila Haji Mohd Hussin
bell_beaut...@hotmail.com wrote:
I
I already got few replies regarding this issue but I still haven't solved and I
don't even have the slightest idea what's causing it.
I tried mogrify, convert using ImageMagick, none of them works still giving me
the following errors when after loading contact map pdb file onContact Map
Hello everyone especially to people who have used Contact Map Visualizer plugin
before. Please refer the link below for more details of the
issue:http://www.pymolwiki.org/index.php/Contact_map_visualizer In that link I
managed to generate the contact map successfully and converted the
Hi Suhaila,
It looks like it's trying to load the XPM file, in stead of the
jpg/png. How did you invoke Pymol and what commands did you give?
Cheers,
Tsjerk
On Tue, Mar 13, 2012 at 1:49 PM, Suhaila Haji Mohd Hussin
bell_beaut...@hotmail.com wrote:
Hello everyone especially to people who have
used ImageMagick to convert it and run the
following commands:
mogrify -format jpg *.xpm
or
mogrify -format png *.xpm
Cheers,
Suhaila
Date: Tue, 13 Mar 2012 14:01:21 +0100
Subject: Re: [PyMOL] Error running Contact Map Visualizer Plugin
From: tsje...@gmail.com
To: bell_beaut
, 13 Mar 2012 14:01:21 +0100
Subject: Re: [PyMOL] Error running Contact Map Visualizer Plugin
From: tsje...@gmail.com
To: bell_beaut...@hotmail.com
CC: pymol-users@lists.sourceforge.net
Hi Suhaila,
It looks like it's trying to load the XPM file, in stead of the
jpg/png. How did you
On 03/13/2012 02:43 PM, Suhaila Haji Mohd Hussin wrote:
I tried that just now, the error is still the same :(
Perhaps you're right about Gromacs XMP files aren't properly processed
by ImageMagick.
it worked for me with:
convert contact-map.xpm contact-map.png
Cheers,
Thomas
--
Thomas
...@gmail.com; pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] Error running Contact Map Visualizer Plugin
On 03/13/2012 02:43 PM, Suhaila Haji Mohd Hussin wrote:
I tried that just now, the error is still the same :(
Perhaps you're right about Gromacs XMP files aren't properly
