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From: Jhon Thomas [mailto:jhon1.tho...@gmail.com]
Sent: Friday, 27 March 2009 8:20 p.m.
To: Joel Tyndall
Subject: Re: [PyMOL] depiction of ligands
Hi joel
Thanks for your reply...
I want to show my ligand
Hi Thomas,
Joel gave some pointers using the menus. But the reason for giving
spheres and mentioning that as a generic way is that spheres will work
for connected as well as non-bonded atoms. In the case of sulphate you
probably want to have a stick representation. The hydrogen bonds can
be drawn
Hi all
I would like to know, how we can show the ligands in pymol. Although i can
see the non-bonded atoms ( HOH) automatically, eacept other nonbonded atoms
l;ike sulphate and metal ions. I will appreciate the suggestions.
Thanks in advance
Thomas
Hi Thomas,
You're not really specific here, so I'll give the most general reply:
show spheres, hetatm
By the way, these compounds will definitely be drawn either as sticks
or as nonbonded upon loading of the structure. You may not easily see
them, but if they're in the file, they'll be drawn.
From: Jhon Thomas [mailto:jhon1.tho...@gmail.com]
Sent: Thursday, 26 March 2009 5:30 a.m.
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] depiction of ligands
Hi all
I would like to know, how we can show the ligands in pymol. Although i can see
the non-bonded atoms ( HOH
