Re: [PyMOL] sporadic pymol/X-server freezes?

2006-03-24 Thread Tim Fenn
On Thu, Mar 23, 2006 at 08:56:27PM -0500, Peter Adrian Meyer wrote: I guess it shouldn't supprise me that there are issues with proprietary OpenGL on linux (FYI the two machines I've seen this on are using ATI and intel graphics cards). I'll try out the options you mentioned. So the ATI

RE: [PyMOL] sporadic pymol/X-server freezes?

2006-03-24 Thread Soisson, Stephen Michael
, March 24, 2006 3:30 AM To: Peter Adrian Meyer Cc: Warren DeLano; pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] sporadic pymol/X-server freezes? On Thu, Mar 23, 2006 at 08:56:27PM -0500, Peter Adrian Meyer wrote: I guess it shouldn't supprise me that there are issues with proprietary

Re: [PyMOL] sporadic pymol/X-server freezes?

2006-03-24 Thread Sabuj Pattanayek
No consistent pattern. Both machines are x86, non-nvidia graphics cards (which probably isn't helping). But, score at least one working setup (yours) as a fully functional combination. Yes always go with nvidia on linux x86/x86_64 if you can. Do you have an ati/sis/3dlabs/intel product?

[PyMOL] sporadic pymol/X-server freezes?

2006-03-23 Thread Peter Adrian Meyer
Hi everyone, Has anyone else run into cases where pymol will freeze the X-server (pymol doesn't repond to mouse or keyboard input; keyboard non-responsive to caps-lock on/off)? The system is still stable, I'm able to login remotely and see that pymol is running at 100% CPU. Killing pymol

RE: [PyMOL] sporadic pymol/X-server freezes?

2006-03-23 Thread Warren DeLano
...@lists.sourceforge.net] On Behalf Of Peter Adrian Meyer Sent: Thursday, March 23, 2006 9:32 AM To: pymol-users@lists.sourceforge.net Subject: [PyMOL] sporadic pymol/X-server freezes? Hi everyone, Has anyone else run into cases where pymol will freeze the X-server (pymol doesn't repond to mouse

Re: [PyMOL] sporadic pymol/X-server freezes?

2006-03-23 Thread Sabuj Pattanayek
Hi, Has anyone else run into cases where pymol will freeze the X-server (pymol doesn't repond to mouse or keyboard input; keyboard non-responsive to caps-lock on/off)? no. I've only seen this while looking at several maps/masks (but that's most of what I use pymol for, so I'm not sure if

RE: [PyMOL] sporadic pymol/X-server freezes?

2006-03-23 Thread Peter Adrian Meyer
pymol/X-server freezes? Hi everyone, Has anyone else run into cases where pymol will freeze the X-server (pymol doesn't repond to mouse or keyboard input; keyboard non-responsive to caps-lock on/off)? The system is still stable, I'm able to login remotely and see that pymol is running at 100

Re: [PyMOL] sporadic pymol/X-server freezes?

2006-03-23 Thread Peter Adrian Meyer
same here, how big are your map files in MB, how much ram and swap space do you have? ~5MB/map, 512MB RAM, ~2GB swap. I'd expect a segfault (or an exception at least) if I was overloading the memory/swap, and CPU would drop if it was running out of physical RAM and swapping too much. I