RE: [PyMOL] Homologous modelling

2005-05-09 Thread Warren DeLano
-users-ad...@lists.sourceforge.net] On Behalf Of > Heinz-Uwe Hobohm > Sent: Monday, May 09, 2005 7:48 AM > To: Scott Classen; PyMOLBB > Subject: Re: [PyMOL] Homologous modelling > > Thanks for the replies on my "How to spoil PyMol for > modelling" request. Despite Peitzsch's SwissM

Re: [PyMOL] Homologous modelling

2005-05-09 Thread Heinz-Uwe Hobohm
Thanks for the replies on my "How to spoil PyMol for modelling" request. Despite Peitzsch's SwissModel (very convenient) and Sali's Modeller (less convenient but perhaps more precise ?) I would like to know, for educational purposes, whether PyMol could do reasonably well also. To be more pre

Re: [PyMOL] Homologous modelling

2005-05-03 Thread Scott Classen
Hi Uwe, try Modeller: http://salilab.org/modeller/ Ciao, Scott On May 3, 2005, at 10:02 AM, Heinz-Uwe Hobohm wrote: Hi, assume you have a protein structure (P1) and a second protein sequence (S1) without structure. Both sequences align with about 50% sequence identity over a large por