[Bioc-devel] IMPORTANT inst/doc/*Rnw to vignettes/

2013-10-20 Thread Gordon K Smyth
Hi Martin, Thanks for the heads-up. I think I've made the changes necessary, but am having trouble confirming whether the changes are correct on a Windows machine. Could you tell me hows Bioconductor builds the Windows binaries of Bioconductor packages? To see how things work, I am

[Rd] Subversion log no longer being updated daily

2013-10-20 Thread Berend Hasselman
The subversion log for 2013 (http://developer.r-project.org/R_svnlog_2013) on the R developer page hasn't been updated since September 29. I would appreciate the daily updates returning. Berend Hasselman __ R-devel@r-project.org mailing list

[Rd] Question about selective importing of package functions...

2013-10-20 Thread Jonathan Greenberg
I'm working on an update for my CRAN package spatial.tools and I noticed a new warning when running R CMD CHECK --as-cran: * checking CRAN incoming feasibility ... NOTE Maintainer: 'Jonathan Asher Greenberg spatial-to...@estarcion.net' Depends: includes the non-default packages: 'sp' 'raster'

Re: [Rd] Question about selective importing of package functions...

2013-10-20 Thread Duncan Murdoch
On 13-10-20 4:43 PM, Jonathan Greenberg wrote: I'm working on an update for my CRAN package spatial.tools and I noticed a new warning when running R CMD CHECK --as-cran: * checking CRAN incoming feasibility ... NOTE Maintainer: 'Jonathan Asher Greenberg spatial-to...@estarcion.net' Depends:

Re: [Rd] Question about selective importing of package functions...

2013-10-20 Thread Jonathan Greenberg
Duncan: Thanks -- learning something new today -- quick follow-up, will using the import statements in the NAMESPACE, when a user goes to install.packages(), auto-install the dependent packages the same way Depends forces? --j On Sun, Oct 20, 2013 at 3:49 PM, Duncan Murdoch

Re: [Rd] Question about selective importing of package functions...

2013-10-20 Thread Gabor Grothendieck
On Sun, Oct 20, 2013 at 4:49 PM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On 13-10-20 4:43 PM, Jonathan Greenberg wrote: I'm working on an update for my CRAN package spatial.tools and I noticed a new warning when running R CMD CHECK --as-cran: * checking CRAN incoming feasibility ...

Re: [Rd] Question about selective importing of package functions...

2013-10-20 Thread Jonathan Greenberg
One more follow-up -- will I now need to include a library() statement in each function? --j On Sun, Oct 20, 2013 at 3:58 PM, Gabor Grothendieck ggrothendi...@gmail.com wrote: On Sun, Oct 20, 2013 at 4:49 PM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On 13-10-20 4:43 PM, Jonathan

Re: [Rd] Question about selective importing of package functions...

2013-10-20 Thread Dirk Eddelbuettel
On 20 October 2013 at 16:20, Jonathan Greenberg wrote: | One more follow-up -- will I now need to include a library() statement in | each function? No. NAMESPACE entry, coupled with Imports: in DESCRIPTION. Dirk -- Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com

Re: [Rd] Question about selective importing of package functions...

2013-10-20 Thread Jonathan Greenberg
To be clear, if I used Depends: somepackage before, and switched over to using Imports: somepackage, I'll need to mod my code that used to have a call to, say, somefunction to now have somepackage::somefunction, correct? --j On Sun, Oct 20, 2013 at 5:34 PM, Dirk Eddelbuettel e...@debian.org

Re: [Rd] Question about selective importing of package functions...

2013-10-20 Thread Duncan Murdoch
On 13-10-20 4:54 PM, Jonathan Greenberg wrote: Duncan: Thanks -- learning something new today -- quick follow-up, will using the import statements in the NAMESPACE, when a user goes to install.packages(), auto-install the dependent packages the same way Depends forces? You need to list the

Re: [Rd] Question about selective importing of package functions...

2013-10-20 Thread Gabriel Becker
Jonathan, import/importFrom directives within the NAMESPACE places the symbol(s) within your package's namespace. They are treated exactly the same as (non-exported) symbols your code defines. ~G On Sun, Oct 20, 2013 at 3:41 PM, Jonathan Greenberg j...@illinois.eduwrote: To be clear, if I

Re: [Rd] Question about selective importing of package functions...

2013-10-20 Thread Duncan Murdoch
On 13-10-20 6:41 PM, Jonathan Greenberg wrote: To be clear, if I used Depends: somepackage before, and switched over to using Imports: somepackage, I'll need to mod my code that used to have a call to, say, somefunction to now have somepackage::somefunction, correct? No. You need to modify

Re: [Rd] Question about selective importing of package functions...

2013-10-20 Thread Paul Gilbert
On 13-10-20 04:58 PM, Gabor Grothendieck wrote: On Sun, Oct 20, 2013 at 4:49 PM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On 13-10-20 4:43 PM, Jonathan Greenberg wrote: I'm working on an update for my CRAN package spatial.tools and I noticed a new warning when running R CMD CHECK

Re: [Rd] Parallel R expression evaluations

2013-10-20 Thread Simon Urbanek
Jai, On Oct 19, 2013, at 1:37 AM, JaiReddy wrote: Thanks Simon. May I know how R works if two expressions come at the same time for evaluation. When I debug my case I found that issue was found with indexed values of protected items. As R is single threaded engine, I just want to know

Re: [Rd] Subversion log no longer being updated daily

2013-10-20 Thread Simon Urbanek
On Oct 20, 2013, at 2:00 AM, Berend Hasselman wrote: The subversion log for 2013 (http://developer.r-project.org/R_svnlog_2013) on the R developer page hasn't been updated since September 29. I would appreciate the daily updates returning. Sorry, my bad, with all the server switching I

Re: [Rd] Subversion log no longer being updated daily

2013-10-20 Thread Berend Hasselman
On 21-10-2013, at 03:38, Simon Urbanek simon.urba...@r-project.org wrote: On Oct 20, 2013, at 2:00 AM, Berend Hasselman wrote: The subversion log for 2013 (http://developer.r-project.org/R_svnlog_2013) on the R developer page hasn't been updated since September 29. I would appreciate