Re: [Rd] R 4.0.1-4.0.5 built with Intel Composer 19.0-19.1.1, errors in "make check" on CentOS 7.7-7.9

2021-04-17 Thread Ryan Novosielski
> On Apr 17, 2021, at 5:52 AM, Ivan Krylov wrote: > > On Sat, 17 Apr 2021 00:13:42 +0000 > Ryan Novosielski wrote: > >> reg-tests-1d.Rout.fail: >> https://rutgersconnect-my.sharepoint.com/:u:/g/personal/novosirj_oarc_rutgers_edu/EYK2JHWQ1-9Dvu6gK9lrkRIBkEyA4QqkeH7

Re: [Rd] R 4.0.1-4.0.5 built with Intel Composer 19.0-19.1.1, errors in "make check" on CentOS 7.7-7.9

2021-04-16 Thread Ryan Novosielski
> On Apr 16, 2021, at 2:32 PM, Ivan Krylov wrote: > > On Fri, 16 Apr 2021 18:06:51 +0000 > Ryan Novosielski wrote: > >> Well it definitely somehow could have, since it did > > Wow! This is strange, but at least it should be easy to fix. Try editing > the config.

Re: [Rd] R 4.0.1-4.0.5 built with Intel Composer 19.0-19.1.1, error in "make check" on CentOS 7.7-7.9

2021-04-16 Thread Ryan Novosielski
> On Apr 16, 2021, at 2:32 PM, Ivan Krylov wrote: > > On Fri, 16 Apr 2021 18:06:51 +0000 > Ryan Novosielski wrote: > >> Well it definitely somehow could have, since it did > > Wow! This is strange, but at least it should be easy to fix. Try editing > the config.

Re: [Rd] R 4.0.1-4.0.5 built with Intel Composer 19.0-19.1.1, error in "make check" on CentOS 7.7-7.9

2021-04-16 Thread Ryan Novosielski
> On Apr 16, 2021, at 12:12 PM, Ivan Krylov wrote: > > On Thu, 15 Apr 2021 22:46:56 +0000 > Ryan Novosielski wrote: > >> (gdb) print $_siginfo._sifields._sigfault >> $1 = { >> si_addr = 0x7f7fecf8, _addr_lsb = 0, >> _addr_bnd = {_lower = 0xff

Re: [Rd] R 4.0.1-4.0.5 built with Intel Composer 19.0-19.1.1, error in "make check" on CentOS 7.7-7.9

2021-04-15 Thread Ryan Novosielski
> On Apr 15, 2021, at 10:35 AM, Ivan Krylov wrote: > > Hello Ryan, > > Sorry for not responding right away -- it took me a while to remember > what I meant back then :) There was a long pause there, as I didn’t get to try out those debugging instructions from Frederik right

Re: [Rd] R 4.0.1-4.0.5 built with Intel Composer 19.0-19.1.1, error in "make check" on CentOS 7.7-7.9

2021-04-09 Thread Ryan Novosielski
> On Jun 25, 2020, at 8:06 AM, Ivan Krylov wrote: > > On Wed, 24 Jun 2020 18:56:06 +0000 > Ryan Novosielski wrote: > > On my machine, getOption('expressions') is 5000 and the example from > the test correctly stops with length(traceback()) == 2500. (And the >

Re: [Rd] R 4.0.1-4.0.2 built with Intel Composer 19.0-19.1.1, error in "make check" on CentOS 7.7

2020-06-26 Thread Ryan Novosielski
> On Jun 25, 2020, at 8:06 AM, Ivan Krylov wrote: > > On Wed, 24 Jun 2020 18:56:06 +0000 > Ryan Novosielski wrote: > > On my machine, getOption('expressions') is 5000 and the example from > the test correctly stops with length(traceback()) == 2500. (And the >

Re: [Rd] R 4.0.1-4.0.2 built with Intel Composer 19.0-19.1.1, error in "make check" on CentOS 7.7

2020-06-26 Thread Ryan Novosielski
> On Jun 25, 2020, at 10:31 AM, Bjørn-Helge Mevik wrote: > > Signed PGP part > Ryan Novosielski writes: > >> Hi there, >> >> I initially asked about this on r-help and was told this might be a better >> venue. I’m not really convinced from reading th

[Rd] R 4.0.1-4.0.2 built with Intel Composer 19.0-19.1.1, error in "make check" on CentOS 7.7

2020-06-24 Thread Ryan Novosielski
> tryCatch(foo(), error=function(x) TRUE) # now simple "infinite recursion" *** caught segfault *** address 0x7fff4dc1b9f8, cause 'memory not mapped' Traceback: 1: foo() 2: foo() 3: foo() 4: foo() ... 2712: foo() 2713: foo() 2714: foo() 2715: foo() 2716: foo() 27

Re: [Rd] should base R have a piping operator ?

2019-10-05 Thread Jeff Ryan
Is there some concrete example of your “many workflows don’t even make much sense without pipes nowadays” comment? I don’t think I’m opposed to pipes in the absolute, but as I am now deep into my second decade of using R I’ve done just fine without them. As I would guess have the vast majority of

Re: [Rd] Child thread libR.so

2015-08-25 Thread Ryan C Metzger
ression = PROTECT(allocVector(LANGSXP, 2)); SETCAR(aperm_expression, aperm_function); } } -- SNIP This now behaves appropriately from a child thread in my custom front end. thank you again Simon, Ryan > Ryan, > > if you read the piece you quoted from more car

Re: [Rd] Child thread libR.so

2015-08-24 Thread Ryan C Metzger
t main.c:861 #4 0x2b14a98b in Rf_initEmbeddedR (argc=, argv=) at Rembedded.c:63 On Thu, Aug 20, 2015 at 1:21 PM, Ryan C Metzger wrote: > So I'm working on a custom front end to R, in one mode of the front > end I dynamically load libR.so into a child worker thread. I'm ve

[Rd] Child thread libR.so

2015-08-20 Thread Ryan C Metzger
bugging if configure makes a mistake. It was created by R configure 3.2.1, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --prefix /u/rmetzger/linux_R_vanilla --enable-R-shlib ## - ## ## Platform. ## thank you! Ryan __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Passing R code from webpage

2013-02-17 Thread Jeff Ryan
ve-on-ubuntu.html > You can ask questions about FastRWeb or Rserve on the stats-rosuda-devel > mailing list. > > Cheers, > Simon > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-d

[Rd] formal vs. passed args: parent.frame() behavior.

2013-01-02 Thread Jeff Ryan
{ load(tmp,env=parent.frame()); str(A) } ) Error in str(A) : object 'A' not found > > # works as well! > local( { load(tmp,env=environment()); str(A) } ) num 101 > > ls()## NOT in .GlobalEnv, correct! [1] "tmp" > args(load) ## env=parent.fra

Re: [Rd] Behavior or as.environment in function arguments/call (and force() behaviors...)

2013-01-01 Thread Jeff Ryan
ation, and I'm glad I wasn't just missing/misreading the primary docs. Best, Jeff On Tue, Jan 1, 2013 at 4:21 PM, Duncan Murdoch wrote: > On 13-01-01 4:35 PM, Jeff Ryan wrote: > >> Happy 2013! >> >> Can someone with more knowledge of edge case scoping/e

[Rd] Behavior or as.environment in function arguments/call (and force() behaviors...)

2013-01-01 Thread Jeff Ryan
in11.2.0 arch x86_64 os darwin11.2.0 system x86_64, darwin11.2.0 status Under development (unstable) major 3 minor 0.0 year 2012 month 12 day28 svn rev61464 language R version.string R Under developm

Re: [Rd] methods cbind2 bind_activation disrupts cbind everywhere

2012-09-14 Thread Jeff Ryan
}) > and of course the same with rbind(). > > > > This came up in the context of complex package > > dependencies in Bioconductor, as detailed in this thread > > (sorry for the html). > > > https://stat.ethz.ch/pipermail/bioc-devel/2012-Septem

Re: [Rd] R crashes when printing a named numeric vector of a specific class - Bug?

2012-09-11 Thread Jeff Ryan
6] LC_MESSAGES=en_US.UTF-8LC_PAPER=C LC_NAME=C > LC_ADDRESS=C LC_TELEPHONE=C > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] stats graphics grDevices utils datasets methods base &

Re: [Rd] Arrays Partial unserialization

2012-08-31 Thread Jeff Ryan
lize.c. > > Duncan Murdoch > >> >> Hoping my request is understandable, >> >> All the best, >> >> Damien.G >> >> __ >> R-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listin

Re: [Rd] include dll in R-package

2012-08-24 Thread Jeff Ryan
tter assurrance that compatible tools are used) >> and distasteful as CRAN is about Open Source. >> >> So your best bet may be to go back to the copyright holders >> > > Dirk's comments are extremely relevant if you were hoping to host the > package on CRAN (which you basica

Re: [Rd] chown, chgrp?

2012-08-15 Thread Jeff Ryan
ic curiosity so I >> don't think it makes sense to add it at this point. >> > > It does however raise the question, "What is Hadley up to now?" :) > > Barry > > __ > R-devel@r-project.org mailing list &g

Re: [Rd] Negative years with strptime?

2012-07-10 Thread Jeffrey Ryan
1)) >> # Error during wrapup: character string is not in a standard unambiguous >> format >> >> >> # as.Date.character uses strptime, so we can try using strptime directly >> strptime(as.character(x), "%Y-%m-%d") >> # "0001-01-24" "0500-01-24" >> >> strptime(as.character(x - 391), "%Y-%m-%d") >> # NA "0498-12-29" >> >> >> Thanks, >> -Winston >> >> [[alternative HTML version deleted]] >> >> __ >> R-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-devel >> > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel -- Jeffrey Ryan jeffrey.r...@lemnica.com www.lemnica.com www.esotericR.com __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Capturing signals from within external libs

2012-05-23 Thread Jeffrey Ryan
ghts are very appreciated, and I now have further knowledge into making this work in other applications, but my hope for this one is dwindling. Best, Jeff On 5/23/12 11:49 AM, "Simon Urbanek" wrote: > >On May 23, 2012, at 12:40 PM, Jeffrey Ryan wrote: > >> Simon, &g

Re: [Rd] Capturing signals from within external libs

2012-05-23 Thread Jeffrey Ryan
wrote: >Jeff, > >On May 22, 2012, at 4:31 PM, Jeffrey Ryan wrote: > >> I have a continuous loop running in an external library that I am >>calling >> from C (R API). This loop is processing events in real time with the >> possibility of significant lag between ev

[Rd] Capturing signals from within external libs

2012-05-22 Thread Jeffrey Ryan
I have a continuous loop running in an external library that I am calling from C (R API). This loop is processing events in real time with the possibility of significant lag between events. When processing an event, I can make use of R_CheckUserInterrupt, but while the external library code is wa

Re: [Rd] fast version of split.data.frame or conversion from data.frame to list of its rows

2012-05-03 Thread Jeff Ryan
e are even some crude methods to convert as is data.frames to mmap struct object directly (hint: as.mmap) Again, likely not enough to shoehorn into your effort, but worth a look to see if it might be useful, and/or see the C design underlying it. Best, Jeff Jeffrey Ryan|Founder|

Re: [Rd] Using other peoples packages from within C-based R-extension

2012-04-24 Thread Jeffrey Ryan
This link may be of help as well... https://stat.ethz.ch/pipermail/r-devel/2008-November/051262.html HTH Jeff On 4/24/12 12:35 PM, "oliver" wrote: >Hello, > >OK, thanks for the information... > > >On Tue, Apr 24, 2012 at 12:02:33PM -0500, Dirk Eddelbuettel wrote: >> >> On 24 April 2012 at 1

Re: [Rd] CRAN policies

2012-03-27 Thread Jeffrey Ryan
ion of how we can help, as well as a peek into what goes on 'behind the curtain' ;-) On 3/27/12 1:19 PM, "Uwe Ligges" wrote: > > >On 27.03.2012 19:10, Jeffrey Ryan wrote: >> Is there a distinction as to NOTE vs. WARNING that is documented? I've >> al

Re: [Rd] CRAN policies

2012-03-27 Thread Jeffrey Ryan
Is there a distinction as to NOTE vs. WARNING that is documented? I've always assumed (wrongly?) that NOTES weren't an issue with publishing on CRAN, but that they may change to WARNINGS at some point. Is the process by which this happens documented somewhere? Jeff On 3/27/12 11:09 AM, "Gabor G

Re: [Rd] Julia

2012-03-01 Thread Jeffrey Ryan
_ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel -- Jeffrey Ryan jeffrey.r...@lemnica.com www.lemnica.com www.esotericR.com R/Finance 2012: Applied Finance with R www.RinFinance.com See you in Chicago __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Identical copy of base function

2012-02-27 Thread Jeffrey Ryan
On Mon, Feb 27, 2012 at 9:19 AM, Martin Maechler wrote: >>>>>> Jeffrey Ryan >>>>>>     on Mon, 27 Feb 2012 07:39:32 -0600 writes: > >    > Doesn't this also mean that if Matrix is loaded first, >    > det() will be calling Matrix::deter

Re: [Rd] Identical copy of base function

2012-02-27 Thread Jeffrey Ryan
) inside det() will > correctly dispatch Matrix methods for determinant(), whereas > base::det() would not. > > Martin > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel -- Jeffrey Ryan

Re: [Rd] which R package is used for browsing web pages through coding

2012-02-15 Thread Jeffrey Ryan
_ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel -- Jeffrey Ryan jeffrey.r...@lemnica.com www.lemnica.com www.esotericR.com R/Finance 2012: Applied Finance with R www.RinFinance.com See you in Chicago __

Re: [Rd] seq.Date bug?

2012-01-31 Thread Jeffrey Ryan
t;%b-%y") to create 'pretty' names, > and the double entries screw that. > > Morale:  pick a mid-month date, and shift that. > > Dirk > > | Duncan Murdoch > | > | > | > > | > (And yes, I think I know that Hadley's lubridate has code for this too,

Re: [Rd] Efficiency of factor objects

2011-11-05 Thread Jeffrey Ryan
have to come up with a real use case to hope > convincing the developers a change is needed. There are probably many > more interesting areas where speedups can be gained than that. > > > Regards > > __ > R-devel@r-projec

Re: [Rd] readRDS and saveRDS

2011-10-18 Thread Jeffrey Ryan
er than the current > combo. > > Hadley > > -- > Assistant Professor / Dobelman Family Junior Chair > Department of Statistics / Rice University > http://had.co.nz/ > > __ > R-devel@r-project.org mailing list > http

Re: [Rd] readRDS and saveRDS

2011-10-18 Thread Jeffrey Ryan
ing list > https://stat.ethz.ch/mailman/listinfo/r-devel > -- Jeffrey Ryan jeffrey.r...@lemnica.com www.lemnica.com www.esotericR.com __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] tzone DB lawsuit Implications for R-project?

2011-10-07 Thread Jeff Ryan
Does anyone from core have a comment on the implications for the R-project on this: http://www.theregister.co.uk/2011/10/07/unix_time_zone_database_destroyed/ Given the inclusion of the TZ database with R as well as the functionality used by R, is this something that the FSF is looking at yet?

Re: [Rd] Issue with seek() on gzipped connections in R-devel

2011-09-23 Thread Jeffrey Ryan
native to using seek? If I > want to read something at (original, uncompressed) byte offset 352, as > here, do I have to read and discard everything that comes before it > first? That seems inelegant at best... > > Regards, > Jon > > > On 23 September 2011 16:54, Jeffrey R

Re: [Rd] Issue with seek() on gzipped connections in R-devel

2011-09-23 Thread Jeffrey Ryan
;. I see some zlib-related changes mentioned in the > NEWS, but I don't see any indication that this is expected. Could > anyone shed any light on it, please? > > Thanks and all the best, > Jon > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > -- Jeffrey Ryan jeffrey.r...@lemnica.com www.lemnica.com www.esotericR.com __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Is it possible to pass a function argument from R to compiled code in C?

2011-09-20 Thread Jeffrey Ryan
devel mailing list archive at Nabble.com. > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > -- Jeffrey Ryan jeffrey.r...@lemnica.com www.lemnica.com www.esotericR.com __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Is xtable still being maintained?

2011-09-10 Thread Jeffrey Ryan
chive at Nabble.com. >>> >>> __ >>> R-devel@r-project.org mailing list >>> https://stat.ethz.ch/mailman/listinfo/r-devel >> >> __ >> R-devel@r-project.org m

Re: [Rd] Non-GPL C (or R) inside of a package

2011-08-31 Thread Jeffrey Ryan
On Wed, Aug 31, 2011 at 10:40 AM, oliver wrote: > On Wed, Aug 31, 2011 at 10:34:38AM -0500, Jeffrey Ryan wrote: > [...] >> My case is a bit more subtle, as the code that I am writing makes no >> use of any GPL code, aside from the compilation and linking to allow >> G

Re: [Rd] Non-GPL C (or R) inside of a package

2011-08-31 Thread Jeffrey Ryan
On Tue, Aug 30, 2011 at 3:52 PM, Prof Brian Ripley wrote: > > On Tue, 30 Aug 2011, Duncan Murdoch wrote: > >> On 30/08/2011 1:50 PM, Jeffrey Ryan wrote: >>> >>> R-devel, >>> >>> I am interested in creating a package that requires non-GPL'

[Rd] Non-GPL C (or R) inside of a package

2011-08-30 Thread Jeffrey Ryan
and install process. Thanks, Jeff -- Jeffrey Ryan jeffrey.r...@lemnica.com www.lemnica.com www.esotericR.com [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] slightly speeding up readChar()

2011-08-05 Thread Jeffrey Ryan
hat once you mmap to a huge file, you do operations on it by > working on chunks at a time... are there packages for that, or do I have to > write my own code? > > Thanks! > > Michael > __ > R-devel@r-project.org mailing li

Re: [Rd] CRAN mirror size mushrooming; consider archiving some?

2011-07-26 Thread Jeffrey Ryan
t; > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > -- Jeffrey Ryan jeffrey.r...@lemnica.com www.lemnica.com www.esotericR.com [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Performance of .C and .Call functions vs. native R code

2011-07-14 Thread Jeff Ryan
The .Call overhead isn't the issue. If you'd like some insight into what you are doing wrong (and right), you need to provide code for the list to reproduce your timings with. This is outlined in the posting guide as well. Best, Jeff On Jul 13, 2011, at 8:28 AM, asmahani wrote: > Hello, >

Re: [Rd] "warning: assignment discards qualifiers from pointer target type"

2011-06-08 Thread Jeffrey Ryan
tself > > > (like strlen(3))? > > > > > > > No. > [...] > > OK, I looked at this now. > > LENGTH() checks the length of the vector. > > Good to know this. > > So the problem of a vector of length 0 can be with any arguments of type > SEXP, > hence I will need to check ANY arg on it's length. > > This is vital to stability under any situation. > > Thanks for this valuable hint! > > I will add checks for all my SEXP-args. > > > Ciao, > Oliver > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > -- Jeffrey Ryan jeffrey.r...@lemnica.com www.lemnica.com www.esotericR.com [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] C-Side: Applying a function (given as param) to data (given as param)

2011-06-04 Thread Jeff Ryan
accordingly. It is all in the guide as well as in working example code in R sources as well as many hundreds of package sources. You have access to it all, so spend the time just reading the sources is my recommendation. Best, Jeff Jeffrey Ryan|Founder|jeffrey.r...@lemnica.com

Re: [Rd] help.request() for packages?

2011-04-26 Thread Jeffrey Ryan
'Administrator'. > > Have I misunderstood or missed an option? > > Matthew > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > -- Jeffrey Ryan jeffrey.r...@lemnica.com www.lemnica.com R/Finance 2011 April 29th and 30th in Chicago | www.RinFinance.com [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] Detecting bad lexical scoping

2011-03-17 Thread Ryan King
ng to namespace:: or ::: access all of my own functions (it's in a package) if necessary to block the standard scoping rules. The language def section on environments made me hurt. Thanks, C Ryan King Dept Health Studies University of Chicago __ R

Re: [Rd] hook for when R quits

2011-03-11 Thread Jeffrey Ryan
oad. > > Thanks, > Michael > >        [[alternative HTML version deleted]] > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > -- Jeffrey Ryan jeffrey.r...@lemnica.com www.lemnica.com

Re: [Rd] function call overhead

2011-02-16 Thread Jeffrey Ryan
;il contient par > une > personne autre que le ou les destinataires désignés est interdite. Si vous > recevez > ce courriel par erreur, veuillez le supprimer immédiatement et envoyer sans > délai à > l'expéditeur un message électroniqu

Re: [Rd] Request: Suggestions for "good teaching" packages, esp. with C code

2011-02-15 Thread Jeffrey Ryan
;> __ >> R-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-devel >> > >        [[alternative HTML version deleted]] > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > -- Jeffrey Ryan jeffrey.r...@lemnica.com www.lemnica.com __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Request: Suggestions for "good teaching" packages, esp. with C code

2011-02-15 Thread Jeffrey Ryan
'm only hesitant there > because I'm not entirely sure that a package's C code should introduce > its own functions for handling vectors and matrices, when some general > purpose library might be more desirable.  But that's a small point, > and clarity and completene

Re: [Rd] Writting my own package - 64 bit problem with R_GetCCallable

2011-02-11 Thread Ryan King
Ah thanks, that did fix it. Ryan King On Fri, Feb 11, 2011 at 3:53 PM, Simon Urbanek wrote: > Ryan, > > On Feb 11, 2011, at 4:29 PM, Ryan King wrote: > >> Hello list, >> I've been working on a package of my own.  It works fine on the 32bit >> linux machin

[Rd] Writting my own package - 64 bit problem with R_GetCCallable

2011-02-11 Thread Ryan King
S=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] emmpat_0.001

Re: [Rd] manipulating the Date & Time classes

2011-02-08 Thread Jeffrey Ryan
& Regards, >                                                    Mike > > > "Telescopes and bathyscaphes and sonar probes of Scottish lakes, > Tacoma Narrows bridge collapse explained with abstract phase-space maps, > Some x-ray slides, a music score, Minard's Napolean

Re: [Rd] matching symbols to objects

2011-02-04 Thread Jeff Ryan
.tree' (or parse.tree coerced > into a list)? > > Thanks, Patrick > >        [[alternative HTML version deleted]] > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > -- Jeffrey Ryan jeffrey.r...@lemnica.com www.lemnica.com __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] terribly annoying bug with POSIXlt : one o'clock is midnight?

2011-02-04 Thread Jeff Ryan
Bioscience Engineering > Department of Applied mathematics, biometrics and process control > > tel : +32 9 264 59 87 > joris.m...@ugent.be > --- > Disclaimer : http://helpdesk.ugent.be/e-maildisclaimer.php > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > -- Jeffrey Ryan jeffrey.r...@lemnica.com www.lemnica.com __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Strange behaviour of read and writeBin

2011-02-04 Thread Jeff Ryan
gt; > locale: > [1] C > > attached base packages: > [1] stats     graphics  grDevices utils     datasets  methods   base > > other attached packages: > [1] Biostrings_2.18.2 IRanges_1.8.8 > > loaded via a namespace (and not attached): > [1] Biobase_2.10.0 > > _

Re: [Rd] Stats not loaded? Method for as.ts() results in error

2010-09-03 Thread Jeff Ryan
lem or could help me out with a hint? > > > > Thank you very much, > > Janko > > > > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > > -- Jeffrey Ryan jeff.a.r...@gmail.com __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] How do you make a formal "feature" request?

2010-08-21 Thread Jeff Ryan
__ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > -- Jeffrey Ryan jeff.a.r...@gmail.com __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] segfault on 2.11.0 with large POSIXct vector using as.character

2010-05-26 Thread Jeff Ryan
methods base >> >> >> >> >>> sessionInfo() >>> >>> >> R version 2.11.0 (2010-04-22) >> i486-pc-linux-gnu >> >> locale: >> [1] LC_CTYPE=en_US.utf8 LC_NUMERIC=C >> [3] LC_TIME=en_US.utf8LC_COLLATE=en_

[Rd] segfault on 2.11.0 with large POSIXct vector using as.character

2010-05-26 Thread Jeff Ryan
GES=en_US.utf8 [7] LC_PAPER=en_US.utf8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.utf8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base > -- Jeffrey Ryan jeffrey.r...@insightalg

Re: [Rd] Restrict access to variables in parent environment

2010-05-14 Thread Jeff Ryan
f <- function(a) { > b > } > > environment(f) <- baseenv() > f() > > Hadley > > -- > Assistant Professor / Dobelman Family Junior Chair > Department of Statistics / Rice University > http://had.co.nz/ > > __ >

Re: [Rd] ranges and contiguity checking

2010-05-12 Thread Jeff Ryan
you really want to say that > >> > >> A[i:(i+k)] > >> > >> is legal, but > >> > >> x <- i:(i+k) > >> A[x] > >> > >> is not? That will be very confusing for your users. The problem is > >> that objects

[Rd] gc() reports bytes (MB) but uses notation for bits (Mb)

2010-05-12 Thread Jeff Ryan
considered confusing, or at least not overly obvious to many, but the notational confusion surely can't help. Additional link: http://physics.nist.gov/cuu/Units/binary.html Thanks, Jeff -- Jeffrey Ryan jeffrey.r...@insightalgo.com ia: insight algorithmics www.insightalgo.com [

Re: [Rd] Portability of a C function

2010-02-14 Thread J Ryan
Take a look here, as this may help clear up the unanswered questions: https://stat.ethz.ch/pipermail/r-devel/2008-November/051262.html HTH Jeff Jeffrey A. Ryan jeffrey.r...@insightalgo.com ia: insight algorithmics www.insightalgo.com On Feb 14, 2010, at 3:18 PM, Christophe Genolini paris10

Re: [Rd] optional package dependency

2010-01-14 Thread Jeff Ryan
) > > Thanks for any advice. > > Ross Boylan > > P.S. Thanks, Duncan, for your recent advice on my help format problem > with R 2.7.  I removed the nested \description, and now things look OK. > > __ > R-devel@r-p

Re: [Rd] Rcpp: Clarifying the meaning of GPL?

2009-12-23 Thread Jeff Ryan
es, >>>>    and copyleft is designed to >>>>    protect the rights of copiers, not original contributors. >>>> >>>> >>>> The copyright notice is a correct and legally valid copyright notice.  The >>>> GPL (copyleft) is the copyright *

Re: [Rd] Rcpp: Clarifying the meaning of GPL?

2009-12-22 Thread Jeff Ryan
ern about > the copyright notice > should be viewed in the same spirit as the name change (professional > courtesy). > > Since GPL is largely silent on these issues I have asked the R community to > vote... > > Thanks, > Dominick > > _____

Re: [Rd] CRAN Server download statistics (Was: R Usage Statistics)

2009-11-23 Thread Jeff Ryan
ny people actually use R? > > Thanks, >    Kevin > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > > __ > R-devel@r-project.org mailing list > htt

Re: [Rd] Why is strptime always returning a vector of length 9 ?

2009-08-09 Thread Jeff Ryan
uot; >> [6] "2009-07-30" NA           NA           NA >>> length(strptime(rep(x, 2), format="%B %d, %Y")) >> [1] 9 >>> strptime(rep(x, 2), format="%B %d, %Y")[1:12] >>  [1] "2007-03-09" "2007-05-31" "2008-11-12&

Re: [Rd] Bug in nlm, found using sem; failure in several flavors (PR#13882)

2009-08-07 Thread jeff . a . ryan
wNzcxNzE4NjM4NSwtMC4yOTEyNjIzOTE4Mjc2NzEsMC4y > NTYyNzQxOTU5ODMwMDQsMC4zNDY0NDE0MTExMTYxNDcNCiJuZWdvdXRjb21l > IiwwLjE4MDU0OTkyNTAyNDM3NywwLjAwOTgxNTM4Mzk4NDM0ODUxLC0wLjAz > MzY1NTkwNjMzMDc4MzUsMC4xNjA2NjEzMDc0ODY1NTksMC4zMjQ1MjU2NTMx > NjQ1MDgsMC4zMzAwNzU2NjY1MjY3NjEsLTAuMTYwMTM3NTQ1ODcxNDQ4LDAu > MjU4MzQ5NzA

Re: [Rd] Bug in nlm, found using sem; failure in several flavors (PR#13881)

2009-08-07 Thread Jeff Ryan
DA4NDUs > LTAuMDA1MDcyNjg2MDg0MTc3MDQsMC4wNDQyNDgxMjM1MDgyNTI4LDAuMjEz > MDMyMjQyNDczMzE1LDAuMTYzODQ0NjQwNDk1OTgzLC0wLjEyMDEzMDE5NjM5 > MjQwNiwwLjkzOTEwNzcxNzE4NjM4NSwtMC4yOTEyNjIzOTE4Mjc2NzEsMC4y > NTYyNzQxOTU5ODMwMDQsMC4zNDY0NDE0MTExMTYxNDcNCiJuZWdvdXRjb21l > IiwwLjE4MDU0OTkyNTAyNDM3NywwLjAwOTgxNTM4Mzk4NDM0ODUxLC0wLjAz > MzY1NTkwNjMzMDc

Re: [Rd] inheriting C symbols

2009-08-05 Thread Jeff Ryan
re is no way to add text > to the DESCRIPTION file saying "and load the symbols too"?  It would be > much simpler.  Also a bit more dangerous of course, since function > prototypes are not being exported via a header. > >  Terry T > > > On Wed, 2009-08-05 at 11

Re: [Rd] inheriting C symbols

2009-08-05 Thread Jeff Ryan
T. > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > -- Jeffrey Ryan jeffrey.r...@insightalgo.com ia: insight algorithmics www.insightalgo.com ___

Re: [Rd] How to create a permanent dataset in R.

2009-07-24 Thread Jeff Ryan
The biggest help would come by not pretending to be Albert Einstein. hTh, Jeff On Fri, Jul 24, 2009 at 1:11 AM, Albert EINstEIN wrote: > > > Hi everybody, > > Actually, we know that If we create a dataset in R ,after closing the > session the dataset automatically is closed. I tried for creating

Re: [Rd] beginner's guide to C++ programming with R packages?

2009-06-26 Thread J Ryan
-vanilla < my.R HTH Jeff Jeffrey A. Ryan jeffrey.r...@insightalgo.com ia: insight algorithmics www.insightalgo.com On Jun 26, 2009, at 2:43 PM, Paul Johnson wrote: Hello, again. I'm interested to learn how programmers develop & test C/C++ code with R packages in Linux. I've

Re: [Rd] readBin on binary non-blocking connections (Windows & Unix differences/bugs)

2009-05-19 Thread Jeff Ryan
ise) who knows a bit more about the internals of socket connections in R (w.r.t Windows - as *nix works fine) could provide some much needed insight. Best, Jeff Ryan On Mon, May 18, 2009 at 12:40 PM, Jeff Ryan wrote: > R-devel: > > I am encountering a consistency issue using socketCon

Re: [Rd] readBin on binary non-blocking connections (Windows & Unix differences/bugs)

2009-05-18 Thread Jeff Ryan
yacas.  You could look at its source code in case it brings anything to mind. > > On Mon, May 18, 2009 at 1:40 PM, Jeff Ryan wrote: >> R-devel: >> >> I am encountering a consistency issue using socketConnection and >> readBin with *non-blocking* connections on Unix and Win

[Rd] readBin on binary non-blocking connections (Windows & Unix differences/bugs)

2009-05-18 Thread Jeff Ryan
Ì’ò\001 |ò\001\004“ò\001ä“ò\0010\177ò\001ø•ò\001è{ò\001<“ò\001 $ƒ\001Ü•ò\001à}ò\001 “ò\001 $ƒ\001 $ƒ\001\024\177ò\001 $ƒ\001t“ò\001¨”ò\001ü}ò\001 $ƒ\001 $ƒ\001t|ò\001 $ƒ\001 $ƒ\001ô\177ò\001œ—ò\001ä|ò\001 |ò\001 $ƒ\001d—ò\001 $ƒ\001è’ò\001x{ò\001 $ƒ\001" [77] "' mus

Re: [Rd] bug of *switch* function

2009-03-09 Thread Jeff Ryan
s" > > > when I change *organism* to "yeast", and call *switch* function again, > *species* suppose to be changed to "Sc", but it remain it's original value. > > You can see my screenshot at > http://ygc.azpala.com/2009/03/09/bug-of-r-29-dev > > -- > Bests, > Guangchuang Yu

Re: [Rd] bug (PR#13570)

2009-03-05 Thread Ryan Hafen
Excellent, Ben! Thanks!! On Mar 5, 2009, at 8:24 PM, Benjamin Tyner wrote: Hi Nice to hear from you Ryan. I also do not have the capability to debug on windows; however, there is a chance that the behavior you are seeing is caused by the following bug noted in my thesis (available on

Re: [Rd] bug (PR#13570)

2009-03-05 Thread Ryan Hafen
moothing/ interpolating, not the main loess algorithm. -- Gregory (Greg) L. Snow Ph.D. Statistical Data Center Intermountain Healthcare greg.s...@imail.org 801.408.8111 -Original Message- From: r-devel-boun...@r-project.org [mailto:r-devel-boun...@r- project.org] On Behalf Of Ryan Haf

Re: [Rd] bug (PR#13570)

2009-03-05 Thread Ryan Hafen
't think about the fact that a weighted moving average involving half the data shouldn't oscillate so much. If the consensus is to keep degree=0, I'd be happy to help try to find the problem or provide a test case or something. Thanks for looking into this. Ryan On

[Rd] POSIXlt, POSIXct, strptime, GMT and 1969-12-31 23:59:59

2009-02-27 Thread Jeff Ryan
ide. Jeff > sessionInfo() R version 2.9.0 Under development (unstable) (2009-02-27 r48020) i386-apple-darwin8.11.1 locale: C attached base packages: [1] stats graphics grDevices utils datasets methods base # C PROGRAM # #include #include /* code modified from:

Re: [Rd] length of POSIXlt object (PR#13482)

2009-01-29 Thread Jeff Ryan
"2006-08-05 13:45:00" >> length(t) > [1] 9 >> t[1] > [1] "2006-08-02 13:45:00" >> length(t[1]) > [1] 9 > > > > -- > blog.sethroberts.net > www.shangriladiet.com > boards.shangriladiet.com > cell phone 510 418 7753 (Berkeley) &g

Re: [Rd] package development

2008-12-12 Thread Jeff Ryan
I think the /tmp file gets removed: ERROR: lazy loading failed for package 'xts' ** Removing '/private/tmp/Rinst625532301/xts' ERROR Installation failed. Removing '/tmp/Rinst625532301' At least it seems to when I run R CMD from the shell. > > Yes, there are several options for not distributing

Re: [Rd] package development

2008-12-12 Thread Jeff Ryan
ally >> use source() a few times to get the syntax right, and perhaps run simple >> tests. (But remember, if you use a NAMESPACE, the functions may not behave >> the same when they're sourced into the global environment.) In the early >> stages, I'll do a lot of installs of the packages. >> >> If I was por

Re: [Rd] any suggestions to deal with 'Argument list too long' for a R CMD check?

2008-12-09 Thread Jeff Ryan
tion failed for package 'RFincad' > ** Removing > '/home/whit/dvl/fincad.utils/fincad.generate.R/RFincad.Rcheck/RFincad' > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel >

Re: [Rd] reduce limit number of arguments in methods:::cbind

2008-12-03 Thread Jeff Ryan
Obviously this negates part of the S4 dispatch value, but that can be had by calling cbind2 directly. Jeff -- Jeffrey Ryan [EMAIL PROTECTED] ia: insight algorithmics www.insightalgo.com __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Problem trying to download rimage package (second try)

2008-11-14 Thread Jeff Ryan
reciated as I need to use this package urgently and > also tried various other things without luck > Thanks > >[[alternative HTML version deleted]] > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/

Re: [Rd] Dynamic linking to binary code from other packages??

2008-11-12 Thread Jeff Ryan
of xts on R-forge. Take a look at http://r-forge.r-project.org/scm/?group_id=118 /dev/src/init.c /dev/inst/include/xts.h /dev/inst/include/xts_stubs.c As far as C++ goes, I would suspect the Matrix package again has all the bits you are looking for. HTH Jeff -- Jeffrey Ryan [EMAIL PROTEC

Re: [Rd] .C(..., DUP=FALSE) memory costs depending on input size?

2008-11-06 Thread Jeff Ryan
; > System Details: > - > Linux gpu 2.6.18-6-amd64 #1 SMP Thu May 8 06:49:39 UTC 2008 x86_64 GNU/Linux > R version 2.7.1 (2008-06-23) > -- > View this message in context: > http://www.nabble.com/.C%28...%2C-DUP%3DFALSE%29-memory-costs-depending-on-input-size--t

Re: [Rd] conditionally import a namespace?

2008-10-30 Thread Jeff Ryan
e much less clear. > >FA> Essentially what I want to do is conditionally import the RGtk2 > namespace. >FA> Any suggestions? > > Maybe something along the line of > > if(is.function(try(RGtk2::gtkComboBoxEntryNewText))) { > library(RGtk2) > > > } > >

Re: [Rd] Dates in C api

2008-09-17 Thread Jeff Ryan
ilege. Use of this email is > prohibited when received in error. > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > -- Jeffrey Ryan [EMAIL PROTECTED] ia: insight algorithmics www.insightalgo.com __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

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