Re: [R] Dynamic visualisation of R data using Adobe FLEX

2009-05-02 Thread Yihui Xie
Hi Harsh, If your project is so specific on the regression model, my suggestion is to use tcl/tk or Gtk2 interface instead of FLEX, because your requirement on interaction is simple (e.g. you don't need to drag-and-drop points). I think the example 'run.cor2.examp()' in 'TeachingDemos' package ca

[R] value labes Stata vs factors

2009-05-02 Thread Rob Bakker
Dear Sir/Madam, I converted my Stata Rgenmetvl.dta file with read.dta succesfully in R's Rgenmetvl.Rdata. However, factors give problem in certain calculations, e.g.: > mean(Rgenmetvl$sex) [1] NA Warning message: In mean.default(Rgenmetvl$sex) : argument is not numeric or logical: returning NA W

[R] Bivariate pdf and marginal pdf of non-standard distributions

2009-05-02 Thread Jay Liu
Hi, I am trying to find marginal pdfs when joint pdf of two continuous variables is given. Simple case is like this: The joint pdf is f(x,y) = 4xy, x lies between 0 and 1, and y also lies between 0 and 1. I tried following crude way of doing it but it is not complete. Could you post a sugge

Re: [R] value labes Stata vs factors

2009-05-02 Thread Peter Dalgaard
Rob Bakker wrote: Dear Sir/Madam, I converted my Stata Rgenmetvl.dta file with read.dta succesfully in R's Rgenmetvl.Rdata. However, factors give problem in certain calculations, e.g.: mean(Rgenmetvl$sex) [1] NA Warning message: In mean.default(Rgenmetvl$sex) : argument is not numeric or logi

[R] print value of variable to screen or alert box?

2009-05-02 Thread onyourmark
I am trying to debug a loop. Is there a way to print the value of a variable that is inside a loop? I have a vector v and inside a loop I have v[i] where i is the index of the loop. Is there a way to see v[i] per loop so that I can see what is going on? Thanks -- View this message in context: ht

[R] evaluate a expression

2009-05-02 Thread Ning Ma
Hi, I am new to R. Can anyone tell me how to evaluate an expression stored in a string? such as: > expr <- "3*5" I want to get the result 15. Thanks in advance. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do

Re: [R] evaluate a expression

2009-05-02 Thread Sundar Dorai-Raj
Hi, Ning, Try: eval(parse(text = expr)) HTH, --sundar On Sat, May 2, 2009 at 5:39 AM, Ning Ma wrote: > Hi, > > I am new to R. Can anyone tell me how to evaluate an expression stored > in a string? > such as: >> expr <- "3*5" > I want to get the result 15. > > Thanks in advance. > > ___

Re: [R] evaluate a expression

2009-05-02 Thread ronggui
> eval(parse(text=expr)) [1] 15 2009/5/2 Ning Ma : > Hi, > > I am new to R. Can anyone tell me how to evaluate an expression stored > in a string? > such as: >> expr <- "3*5" > I want to get the result 15. > > Thanks in advance. > > __ > R-help@r-projec

Re: [R] evaluate a expression

2009-05-02 Thread Ning Ma
Thank you and Sunder! On Sat, May 2, 2009 at 8:49 PM, ronggui wrote: >> eval(parse(text=expr)) > [1] 15 > > > 2009/5/2 Ning Ma : >> Hi, >> >> I am new to R. Can anyone tell me how to evaluate an expression stored >> in a string? >> such as: >>> expr <- "3*5" >> I want to get the result 15. >> >>

Re: [R] print value of variable to screen or alert box?

2009-05-02 Thread David Winsemius
On May 2, 2009, at 7:59 AM, onyourmark wrote: I am trying to debug a loop. Is there a way to print the value of a variable that is inside a loop? I have a vector v and inside a loop I have v[i] where i is the index of the loop. Is there a way to see v[i] per loop so that I can see what

Re: [R] print value of variable to screen or alert box?

2009-05-02 Thread Gabor Grothendieck
See ?cat, e.g. > v <- seq(10, 50, 10) > for(i in seq_along(v)) cat("v[", i, "] =", v[i], "\n") v[ 1 ] = 10 v[ 2 ] = 20 v[ 3 ] = 30 v[ 4 ] = 40 v[ 5 ] = 50 On Sat, May 2, 2009 at 7:59 AM, onyourmark wrote: > > I am trying to debug a loop. Is there a way to print the value of a variable > that is

[R] Trouble installing packages on Macintosh OS-X 10.5.6

2009-05-02 Thread jlwoodard
I just upgraded my version of R from 2.8.1 to 2.9.0. After doing so, I now have problems using the package installer to reinstall all my packages. Some download and install without problems, but for others, I get the spinning pinwheel and after even 10 minutes, nothing is downloaded. R stops re

Re: [R] locating rcmd.exe through a batch script

2009-05-02 Thread Uwe Ligges
Santosh wrote: Dear R-sians... Installing libraries Well, I think you want to install a *package* into a library. through RCMD INSTALL does not seem to work.. Is the following command c R CMD install -l "C:\Program Files\R\R-2.8.1\library" Please use forward slashes or soubled backslash

Re: [R] Seed of Random number generation

2009-05-02 Thread Uwe Ligges
cls59 wrote: RON70 wrote: Dear all, is it possible to extract the seed that was used for some random number generation? For example suppose I draw a random sample of size 1000 from a normal population : rnorm(1000) Now I want to know what seed R used for that sample generation. Any way out?

[R] Problems producing a simple plot

2009-05-02 Thread Steve Murray
Dear R Users, I have a data frame of the nature: > head(aggregate_1986) Latitude Mean Annual Simulated Runoff per 1° Latitudinal Band 1 -55574.09287 2 -54247.23078 3 -53

Re: [R] any suggestions on this error?

2009-05-02 Thread Uwe Ligges
onyourmark wrote: Error in matrix(unlist(value, recursive = FALSE, use.names = FALSE), nrow = nr, : invalid 'ncol' value (too large or NA) the statement was: for (i in v) {for (j in m[0,]){if(v[i]==m[0,j]){M[,-j]}}} That code does not make sense at all: - What is m[0,] ? Note that R

Re: [R] Problems producing a simple plot

2009-05-02 Thread Peter Flom
Steve Murray wrote > >I have a data frame of the nature: >I am hoping to plot columns 2 and 3 against Latitude. I understand that you >have to do this by plotting one column at a time, so I have been starting by >attempting the following, but receiving errors: > > >I'm obviously doing someth

Re: [R] Problems producing a simple plot

2009-05-02 Thread David Freedman
you might also look at matplot d=data.frame(x=1:10,y1=sort(rnorm(10)),y2=sort(rnorm(10))) matplot(d[,1],d[,2:3],type='l',lty=1:2) David Freedman Steve Murray-3 wrote: > > > Dear R Users, > > I have a data frame of the nature: > >> head(aggregate_1986) > Latitude Mean Annual Simulated R

Re: [R] Nomogram with stratified cph in Design package

2009-05-02 Thread Frank E Harrell Jr
Renee, I finally found the problem. You misspecified fun.at as a list with two elements. It needed 6 elements to correspond with fun: fun.at=list(at.surv, at.surv, at.surv, at.med, at.med, at.med) You have subjects with a very good prognosis and you are asking for median surviva

Re: [R] Problem with qcc

2009-05-02 Thread Fritsander Lahr
David, You're right. I've to post the attachments on the web. Do you have a suggestion where I may put them? Thanks. Fritsander -Original Message- From: David Winsemius [mailto:dwinsem...@comcast.net] Sent: zaterdag 2 mei 2009 1:45 To: Fritsander Lahr Cc: r-help@r-project.org Subject:

[R] plotting fit from ols( rcs() )

2009-05-02 Thread x
I have: f <- ols( y1 ~ (rcs(x1,3) + rcs(x2,3) + rcs(x1,3) %ia% rcs(x2,3) ) ) Then I do: plot(f) This plots y1 against x2 for a given value of x1. Is there a way to make it *also* plot y1 against x1 for a given value of x2? If not, I guess I can do coplot(y1 ~ x1 | x2). Thanks in advance, sp

Re: [R] Last month on the Revolutions blog

2009-05-02 Thread hadley wickham
Hi David, I think the revolution blog is fantastic and a great service to the R community. Thanks for all your hard work! Hadley On Fri, May 1, 2009 at 4:54 PM, David M Smith wrote: > I write about R every weekday at http://blog.revolution-computing.com > . In case you missed them, here are so

[R] integer ranges in R vs C and Java

2009-05-02 Thread Saptarshi Guha
Hello, I'm using R-2.9 and have a question about integer ranges. On C, (OS X platform), LONG_MIN and LONG_MAX(from limits.h) correspond to -2147483648(-2^31) and 2147483647 (2^31-1) In Java(1.4), Integer.MIN_VALUE and Integer.MAX_VALUE have the same values. On R, as.integer(2^31-1) is the maximum

Re: [R] integer ranges in R vs C and Java

2009-05-02 Thread Martin Morgan
You've hit on the reason -- representation of NA src/main/arithmetic.c:157:R_NaInt = INT_MIN; (R-devel seems more appropriate for this question). Martin Saptarshi Guha writes: > Hello, > I'm using R-2.9 and have a question about integer ranges. On C, (OS X > platform), > LONG_MIN and LON

Re: [R] integer ranges in R vs C and Java

2009-05-02 Thread Saptarshi Guha
> You've hit on the reason -- representation of NA > > src/main/arithmetic.c:157:    R_NaInt = INT_MIN; Aha! Yes, I missed that. > > (R-devel seems more appropriate for this question). Yes, i was not sure. Thank you Saptarshi __ R-help@r-project.org

[R] compiled help pages

2009-05-02 Thread Charles Annis, P.E.
Greetings: This should be easy but it isn't. I have a home-brew package that works fine, with compiled html help pages, all 150 of them. I want to make a similar package but not from scratch since only a half-dozen routines are changed. So I created a new directory, copied the old package

[R] compiled help pages - OS info

2009-05-02 Thread Charles Annis, P.E.
Oops! I forgot the obligatory OS and session info: > sessionInfo() R version 2.8.1 (2008-12-22) i386-pc-mingw32 locale: LC_COLLATE=English_United States.1252;LC_CTYPE=English_United States.1252;LC_MONETARY=English_United States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252

[R] lattice levelplot axis + custom annotations

2009-05-02 Thread Alex Reynolds
How would I set the "scales" property of a lattice levelplot, so that I can add specific annotations at specific positions? For example, I have a 200 x 1000 element levelplot. Along the y-axis (along the 1000-element axis) I would like to add annotations on the left side of the levelplot at

Re: [R] compiled help pages

2009-05-02 Thread Duncan Murdoch
On 02/05/2009 6:37 PM, Charles Annis, P.E. wrote: Greetings: This should be easy but it isn't. I have a home-brew package that works fine, with compiled html help pages, all 150 of them. I want to make a similar package but not from scratch since only a half-dozen routines are changed.

Re: [R] plotting fit from ols( rcs() )

2009-05-02 Thread David Winsemius
On May 2, 2009, at 4:09 PM, x wrote: I have: f <- ols( y1 ~ (rcs(x1,3) + rcs(x2,3) + rcs(x1,3) %ia% rcs(x2,3) ) ) Then I do: plot(f) This plots y1 against x2 for a given value of x1. Is there a way to make it *also* plot y1 against x1 for a given value of x2? Are you using the Design

Re: [R] lattice levelplot axis + custom annotations

2009-05-02 Thread David Winsemius
On May 2, 2009, at 7:00 PM, Alex Reynolds wrote: How would I set the "scales" property of a lattice levelplot, so that I can add specific annotations at specific positions? For example, I have a 200 x 1000 element levelplot. Along the y-axis (along the 1000-element axis) I would like to ad

Re: [R] print value of variable to screen or alert box?

2009-05-02 Thread Greg Snow
Well there are always the print and cat functions which print to standard output. You may also want to look at flush.console if buffering is a problem. Also using "\b" or "\r" with cat can keep from producing too much output. There are also the progress bar functions (winProgressBar, tkProgre

Re: [R] any suggestions on this error?

2009-05-02 Thread Bill.Venables
You have use a zero index. This is not allowed in R (normally). Also your code, even if corrected, would do nothing so I suspect your problems do not stop there. Did you really mean "for(i in v) if(v[i] ... "? Very subtle if you did. Bill Venables http://www.cmis.csiro.au/bill.venabl

Re: [R] print value of variable to screen or alert box?

2009-05-02 Thread Bill.Venables
print(c(i, v[i])) Bill Venables http://www.cmis.csiro.au/bill.venables/ -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of onyourmark Sent: Saturday, 2 May 2009 9:59 PM To: r-help@r-project.org Subject: [R] print value of variable

Re: [R] lattice levelplot axis + custom annotations

2009-05-02 Thread Alex Reynolds
On May 2, 2009, at 5:08 PM, David Winsemius wrote: Not sure since you have not provided a reproducible example and not really defined what "annotations" means. By annotations, I mean that I want to draw an object (set of poiygon() elements that make up a genomic sequence logo), anchored at

Re: [R] compiled help pages

2009-05-02 Thread Charles Annis, P.E.
Thank you, Duncan! You are right-as-rain: I forgot to change the aliases. A single change from \alias{STUFF} to \alias{newSTUFF} in the newSTUFF-package.Rd file did the trick. Thanks! Charles Annis, P.E. charles.an...@statisticalengineering.com phone: 561-352-9699 eFax: 614-455-3265 http://ww

[R] fImport data from Australian stock exchange

2009-05-02 Thread James Smith
Dear all, I have been importing data into R from yahoo using yahooSeries, however the older version I was using no longer works with the syntax I have developed. I downloaded the latest package and it downloads data from the U.S. just fine, but the ticker codes for the Australian stock exchange (